CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.312.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 78.8 Gma.312.1.S1_at BI969938 - - 2e-65 At1g80300 NTT1 (NUCLEOTIDE TRANSPORTER 1) S.X. H.G.
0.22 28.1 Gma.3151.1.S1_a_at BI969607 - - 1e-36 At2g37660 binding / catalytic/ coenzyme binding S.X. H.G.
0.21 26.6 GmaAffx.59856.2.S1_at BM091950 - - 6e-20 At5g17530 phosphoglucosamine mutase family protein S.X. H.G.
0.15 18.7 Gma.13538.1.S1_at BQ742998 - - 3e-1 At1g72810 threonine synthase, putative S.X. H.G.
0.12 15.1 Gma.16277.2.A1_at CD399645 - - 1e-6 At3g24506 unknown protein S.X. H.G.
0.10 13.0 Gma.2250.2.S1_at BQ299055 - - 6e-2 At2g43230 serine/threonine protein kinase, putative S.X. H.G.
0.04 7.0 Gma.6523.1.S1_at CD416204 - - 5e-23 At2g44050 COS1 (COI1 SUPPRESSOR1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.4 99.9 GSM201114 Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
30.6 99.8 GSM201115 Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
25.5 99.8 GSM191075 Soybean_Cotyledon_EP1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
20.9 99.7 GSM184827 Young trifoliate leaf, biological replicate 2 GSE6414 Expression data from soybean seed compartments with embryos at the globular stage
20.6 99.7 GSM201109 Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
18.1 99.7 GSM182032 Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
18.0 99.7 GSM182033 Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
16.3 99.6 GSM245935 Leaf_Water Control_Rep 3_48 h After Treatment GSE9730 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
16.2 99.6 GSM191076 Soybean_Cotyledon_EP2 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
16.1 99.6 GSM238030 Soybean-2601R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 1e-157 557 GmaAffx.83729.1.S1_at BG043690 - - 9e-67 At1g80300 NTT1 (NUCLEOTIDE TRANSPORTER 1) C.G. S.X.
0.02 9e-1 36 GmaAffx.87556.1.S1_at BQ081067 - - 3e+0 Atmg00010 - C.G. S.X.
0.01 9e-1 36 Gma.1484.1.S1_at BI969651 - - 6e-1 At3g29320 glucan phosphorylase, putative C.G. S.X.
0.02 4e+0 34 Gma.7970.1.S1_at BI699189 - - 3e-1 At3g55170 60S ribosomal protein L35 (RPL35C) C.G. S.X.
0.02 4e+0 34 Gma.7508.1.S1_at BU548217 - - 4e-1 At2g45960 PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) C.G. S.X.
0.01 4e+0 34 Gma.5132.1.S1_at BE658422 - - 4e-22 At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative C.G. S.X.
0.02 1e+1 32 PsAffx.psZO009iA11r_at PsAffx.psZO009iA11r - - 4e+0 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) C.G. S.X.
0.01 1e+1 32 PsAffx.C72000017_s_at PsAffx.C72000017 - - 6e+0 At5g05690 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) C.G. S.X.
0.01 1e+1 32 PsAffx.C22000049_at PsAffx.C22000049 - - 1e-3 At1g11700 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 2e-65 250 Arabidopsis thaliana At1g80300 844370 NTT1 (NUCLEOTIDE TRANSPORTER 1) F:ATP:ADP antiporter activity;P:transport;C:membrane, chloroplast envelope;BOPFM - - - C.G. S.X.
0.19 3e-38 159 Hordeum vulgare Contig4728_at Contig4728 - - 4e-31 At1g15500 ATNTT2 C.G. S.X.
0.17 5e-40 167 Oryza sativa Os01g0647100 AK069624.1 - Plastidic ATP/ADP transporter (Fragment) 6e-27 At1g15500 ATNTT2 C.G. S.X.
0.41 2e-88 327 Populus trichocarpa PtpAffx.2792.1.S1_at CN524220 ATP/ADP transporter - 2e-24 At1g15500 ATNTT2 C.G. S.X.
0.26 2e-25 117 Triticum aestivum Ta.6262.2.S1_a_at BE424595 - - 9e-34 At1g15500 ATNTT2 C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1622804_at CB035779 - - 2e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.16 6e-27 121 Zea mays Zm.3368.1.A1_at AY107360.1 hypothetical protein LOC100272602 - 4e-31 At1g15500 ATNTT2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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