Gene omics information

Query gene ID	Gma.3107.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	78.2	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	S.X.	H.G.	Please select
0.82	91.9	Gma.11238.1.S1_a_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.78	90.6	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.77	90.3	Gma.10455.1.S1_s_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.71	87.8	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.77778.1.S1_at	AW185540	-	-	5e+0	At5g52480	-	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.50	71.7	Gma.4927.1.S1_at	BG510284	-	-	7e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.6	98.9	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM293600	30_2081.2B.R035L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM171666	26_V.E.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.2	98.1	GSM293025	2_C027.1N.V7N2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM171616	14_Y.F.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0	98.0	GSM292359	28_C099.1F.V7F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM294383	42_2451.2J.R290L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM294323	72_3157.2I.V7I3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM171653	22_Z.E.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.8	97.9	GSM171714	7_V.I.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	1e-122	440	Gma.2480.1.S1_at	BG839063	-	-	3e-28	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	C.G.	S.X.	Please select
0.02	2e-1	38	GmaAffx.37736.1.S1_at	AW832101	-	-	3e-5	At1g36050	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	PsAffx.CL1696Contig1_at	PsAffx.CL1696Contig1	-	-	2e+1	At5g45350	proline-rich family protein	C.G.	S.X.	Please select
0.00	3e+0	34	PsAffx.C11000097_at	PsAffx.C11000097	-	-	1e+0	At2g40090	ATATH9	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.69979.1.S1_s_at	BU761302	-	-	3e+0	At4g18980	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	34	Gma.1798.1.S1_at	BE474620	-	-	4e-30	At1g19220	ARF19 (AUXIN RESPONSE FACTOR 19)	C.G.	S.X.	Please select
0.01	1e+1	32	PsAffx.C89000011_at	PsAffx.C89000011	-	-	2e+1	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	C.G.	S.X.	Please select
0.01	1e+1	32	PsAffx.C69000063_at	PsAffx.C69000063	-	-	3e+0	At1g05860	unknown protein	C.G.	S.X.	Please select
0.01	1e+1	32	PsAffx.C5000090_at	PsAffx.C5000090	-	-	3e+0	At5g60850	OBP4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	1e-97	357	Arabidopsis thaliana	At5g62790	836400	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	1e-24	113	Hordeum vulgare	Contig6854_at	Contig6854	-	-	8e-63	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	C.G.	S.X.	Please select
0.28	2e-63	244	Oryza sativa	Os01g0106900	AF367205.1	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase,chloroplast precursor (EC 1.1.1.267) (DXPreductoisomerase) (1-deoxyxylulose-5-phosphatereductoisomerase)	3e-81	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	1e-116	420	Populus trichocarpa	PtpAffx.19592.3.S1_at	CA933638	hypothetical protein	-	5e-95	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	1e-32	141	Triticum aestivum	Ta.9229.1.S1_x_at	CK163729	-	-	2e-32	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	C.G.	S.X.	Please select
0.39	2e-121	434	Vitis vinifera	1618940_at	CF212858	hypothetical protein LOC100248516	-	6e-68	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	C.G.	S.X.	Please select
0.31	3e-81	301	Zea mays	Zm.298.1.S1_a_at	CO522174	dxr protein	-	1e-92	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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