CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.3084.2.S1_a_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 91.5 Gma.3084.2.S1_a_at BU081126 - - 1e+0 At2g24395 chaperone protein dnaJ-related S.X. H.G.
0.67 86.1 Gma.2892.1.S1_at CD398484 - - 3e-36 At1g29150 ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) S.X. H.G.
0.55 76.3 Gma.17905.2.S1_at CD393233 - - 8e-37 At4g01320 ATSTE24 S.X. H.G.
0.55 76.3 GmaAffx.87924.1.S1_at AW596893 - - 9e-39 At3g05000 transport protein particle (TRAPP) component Bet3 family protein S.X. H.G.
0.53 74.2 Gma.5810.2.S1_a_at AI965339 - - 2e-79 At3g26340 20S proteasome beta subunit E, putative S.X. H.G.
0.50 71.7 GmaAffx.90062.1.S1_s_at CF805787 - - 1e-108 At1g53750 RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.2 98.1 GSM258499 Soybean shoot apical meristem, 4 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.7 96.8 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.4 96.4 GSM258501 Soybean shoot apical meristem, 1 short-day treatment replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.3 96.2 GSM258504 Soybean shoot apical meristem, 4 short-day replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.2 96.0 GSM267287 Axillary meristem from 10-day-old soybean seedlings GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
2.8 95.1 GSM258497 Soybean Shoot Apical Meristem, 1 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.8 95.1 GSM258496 Vegetative soybean shoot apical meristem GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.7 94.8 GSM237068 Soy_shoot apical meristem GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
2.7 94.8 GSM258498 Soybean shoot apical meristem, 2 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.7 94.8 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 Gma.8021.2.S1_at CA782136 - - 6e-8 At3g54500 - C.G. S.X.
0.03 1e+0 34 GmaAffx.90534.1.S1_at CF806259 - - 6e-15 At4g03390 SRF3 (STRUBBELIG-RECEPTOR FAMILY 3) C.G. S.X.
0.04 1e+0 34 GmaAffx.74864.1.S1_at CA820177 - - 3e+0 At3g60410 unknown protein C.G. S.X.
0.04 1e+0 34 GmaAffx.61351.1.S1_at CA938941 - - 8e-1 At5g63952 unknown protein C.G. S.X.
0.03 1e+0 34 GmaAffx.1023.1.A1_at CA953001 - - 1e-40 At1g47550 unknown protein C.G. S.X.
0.03 1e+0 34 GmaAffx.1023.1.S1_at BG509655 - - 1e-40 At1g47550 unknown protein C.G. S.X.
0.00 6e+0 32 PsAffx.C170000024_at PsAffx.C170000024 - - 2e-1 At4g13290 CYP71A19 C.G. S.X.
0.03 6e+0 32 GmaAffx.92387.1.S1_s_at CF808112 - - 2e-27 At5g18580 FASS (FASS 1) C.G. S.X.
0.04 6e+0 32 GmaAffx.88676.1.A1_at CD411430 - - 4e+0 At5g63440 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At2g24395 816975 chaperone protein dnaJ-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POM - - - C.G. S.X.
0.06 1e-1 36 Hordeum vulgare Contig24050_at Contig24050 - - 1e+1 At5g48050 unknown protein C.G. S.X.
0.03 2e+0 34 Oryza sativa Os.26436.1.S1_at - - - 0 C.G. S.X.
0.03 9e-2 38 Populus trichocarpa PtpAffx.44183.1.S1_at CF228726 hypothetical protein - 1e-19 At5g05710 pleckstrin homology (PH) domain-containing protein C.G. S.X.
0.04 7e-2 38 Triticum aestivum Ta.12431.1.A1_at BQ172324 - - 1e+1 At4g21280 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) C.G. S.X.
0.09 2e-2 38 Vitis vinifera 1606516_s_at CF511684 hypothetical protein LOC100257267 - 7e-3 At4g14110 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) C.G. S.X.
0.04 1e-1 36 Zea mays Zm.2842.1.A1_at AW017874 hypothetical protein LOC100275321 - 8e-1 At4g10650 GTP binding C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage