Gene omics information

Query gene ID	Gma.2961.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.1	Gma.2961.1.S1_at	CD415704	-	-	2e-4	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	S.X.	H.G.	Please select
0.76	89.7	Gma.14152.2.A1_at	CD416499	-	-	3e+0	At4g21570	unknown protein	S.X.	H.G.	Please select
0.75	89.5	Gma.10706.2.S1_s_at	BI968467	-	-	4e-1	At3g24250	glycine-rich protein	S.X.	H.G.	Please select
0.71	87.8	Gma.15727.1.S1_at	CD402241	-	-	4e-3	At5g20630	GER3 (GERMIN 3)	S.X.	H.G.	Please select
0.71	87.8	Gma.3241.1.S1_a_at	CD408286	-	-	4e-5	At1g72610	GER1 (GERMIN-LIKE PROTEIN 1)	S.X.	H.G.	Please select
0.64	83.4	Gma.11530.1.A1_at	AI959853	-	-	3e+0	At3g27940	LBD26 (LOB DOMAIN-CONTAINING PROTEIN 26)	S.X.	H.G.	Please select
0.64	83.4	Gma.17724.2.S1_at	CD402808	-	-	3e+0	At3g46310	unknown protein	S.X.	H.G.	Please select
0.61	81.8	Gma.17724.1.A1_at	CD403006	-	-	7e-1	At4g09840	unknown protein	S.X.	H.G.	Please select
0.50	71.7	Gma.3241.1.S1_at	CD408286	-	-	4e-5	At1g72610	GER1 (GERMIN-LIKE PROTEIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
266.5	100.0	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
257.2	100.0	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
201.0	100.0	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
200.0	100.0	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
163.5	100.0	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
149.6	100.0	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
135.5	100.0	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
122.8	100.0	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
119.8	100.0	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
119.3	100.0	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	7e-66	252	Gma.4948.1.S1_s_at	BI969917	-	-	3e-3	At2g03070	unknown protein	C.G.	S.X.	Please select
0.19	3e-19	97	GmaAffx.5737.1.S1_at	BQ627819	-	-	7e+0	At5g06265	hyaluronan mediated motility receptor-related	C.G.	S.X.	Please select
0.18	1e-18	95	GmaAffx.18014.1.S1_at	BG362707	-	-	1e+0	At2g21160	translocon-associated protein alpha (TRAP alpha) family protein	C.G.	S.X.	Please select
0.07	2e-13	77	GmaAffx.77819.2.A1_at	BI942231	-	-	4e+0	At3g27416	unknown protein	C.G.	S.X.	Please select
0.11	4e-12	73	GmaAffx.76093.1.S1_at	BG045222	-	-	9e-2	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	C.G.	S.X.	Please select
0.06	8e-7	56	GmaAffx.90599.1.S1_at	CF806324	-	-	1e-3	At5g14860	transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.04	1e-5	52	Gma.9288.1.S1_at	BG155460	-	-	7e-4	At5g14860	transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.02	8e-4	46	Gma.11254.1.S1_a_at	CD391589	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	C.G.	S.X.	Please select
0.02	8e-4	46	Gma.11254.1.S1_x_at	CD391589	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-4	48	Arabidopsis thaliana	At1g22360	838843	AtUGT85A2 (UDP-glucosyl transferase 85A2)	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-5	50	Hordeum vulgare	HV_CEb0006N04r2_at	HV_CEb0006N04r2	-	-	2e-8	At2g43820	UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2)	C.G.	S.X.	Please select
0.03	1e+0	36	Oryza sativa	Os06g0534300	9634.m03233	-	-	2e+0	At5g44495	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	9e-10	65	Populus trichocarpa	PtpAffx.224416.1.S1_at	pmrna42915	hypothetical protein	-	1e-2	At1g22400	UGT85A1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.37859.1.A1_at	BJ261476	-	-	4e-9	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	C.G.	S.X.	Please select
0.07	3e-3	42	Vitis vinifera	1620103_at	CF209698	-	-	3e+0	At5g64400	-	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.10282.1.S1_at	BM380108	hypothetical protein LOC100278367	-	6e-1	At3g24065	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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