Gene omics information

Query gene ID	Gma.2892.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	78.2	Gma.2892.1.S1_at	CD398484	-	-	3e-36	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	S.X.	H.G.	Please select
0.93	99.1	GmaAffx.91235.1.S1_s_at	CF806960	-	-	8e-45	At4g31300	PBA1	S.X.	H.G.	Please select
0.88	93.4	GmaAffx.88721.1.S1_s_at	CK606003	-	-	5e-12	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	S.X.	H.G.	Please select
0.88	93.4	Gma.5810.2.S1_a_at	AI965339	-	-	2e-79	At3g26340	20S proteasome beta subunit E, putative	S.X.	H.G.	Please select
0.82	91.9	Gma.17539.2.S1_s_at	BM886770	proteasome IOTA subunit	-	1e-36	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	S.X.	H.G.	Please select
0.82	91.9	GmaAffx.90062.1.S1_s_at	CF805787	-	-	1e-108	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	S.X.	H.G.	Please select
0.75	89.5	Gma.13142.2.S1_a_at	BF069870	-	-	2e-13	At5g15220	ribosomal protein L27 family protein	S.X.	H.G.	Please select
0.74	89.2	GmaAffx.92455.1.S1_s_at	CF808180	-	-	5e-34	At5g42790	PAF1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	97.2	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.8	97.0	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.7	96.8	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.7	96.8	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.6	96.7	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.6	96.7	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.6	96.7	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.5	96.6	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.3	96.2	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.3	96.2	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	1e-150	533	GmaAffx.51048.1.S1_s_at	BM521698	-	-	6e-5	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.46	1e-150	533	GmaAffx.51048.1.S1_at	BM521698	-	-	6e-5	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.49	6e-137	488	Gma.6325.1.S1_at	BQ612904	-	-	4e-4	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.13	9e-62	238	Gma.2892.2.S1_a_at	BI424590	-	-	5e-47	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.13	9e-62	238	Gma.2892.2.S1_at	BI424590	-	-	5e-47	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.24	5e-51	202	PsAffx.psHB023xL04f_at	PsAffx.psHB023xL04f	-	-	1e-43	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.03	3e-15	83	Gma.1166.2.S1_a_at	BI968615	-	-	3e-25	At3g08940	LHCB4.2 (light harvesting complex PSII)	C.G.	S.X.	Please select
0.03	3e-15	83	Gma.1166.2.S1_x_at	BI968615	-	-	3e-25	At3g08940	LHCB4.2 (light harvesting complex PSII)	C.G.	S.X.	Please select
0.03	3e-12	73	Gma.1166.3.S1_x_at	CD406045	-	-	5e-17	At3g08940	LHCB4.2 (light harvesting complex PSII)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	3e-36	153	Arabidopsis thaliana	At1g29150	839789	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	specifically interacts with FUS6/COP11 via the C-terminal domain of FUS6/COP11 and associates with an ATPase subunit of the 19S proteasome regulatory complex, AtS6A.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.36	1e-24	113	Hordeum vulgare	Contig11573_at	Contig11573	-	-	2e-63	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.36	2e-35	151	Oryza sativa	Os04g0444600	AK064788.1	-	26S proteasome subunit RPN6a (Fragment)	3e-34	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.54	2e-59	230	Populus trichocarpa	PtpAffx.155435.1.A1_at	CV236820	-	-	3e-48	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	9e-12	71	Triticum aestivum	Ta.3700.1.A1_at	BJ252627	-	-	3e-18	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.32	2e-37	155	Vitis vinifera	1614730_at	CA812422	hypothetical protein LOC100260524	-	7e-15	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select
0.34	4e-49	194	Zea mays	Zm.6654.1.A1_at	CF038689	26S proteasome non-ATPase regulatory subunit 11	-	3e-28	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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