Gene omics information

Query gene ID	Gma.2887.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	92.8	Gma.2887.1.S1_s_at	CD417784	-	-	1e-23	At4g33865	40S ribosomal protein S29 (RPS29C)	S.X.	H.G.	Please select
0.85	92.8	Gma.3982.1.S1_at	BQ453310	-	-	1e-12	At2g37600	60S ribosomal protein L36 (RPL36A)	S.X.	H.G.	Please select
0.79	90.8	GmaAffx.89935.1.A1_at	CF805660	-	-	3e-60	At3g62870	60S ribosomal protein L7A (RPL7aB)	S.X.	H.G.	Please select
0.78	90.6	GmaAffx.93102.1.S1_s_at	CF808827	-	-	3e-81	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please select
0.70	87.1	Gma.17774.1.S1_at	CA935572	-	-	3e-25	At3g08520	60S ribosomal protein L41 (RPL41D)	S.X.	H.G.	Please select
0.65	83.8	Gma.8329.1.S1_s_at	AI442912	-	-	6e-31	At3g53430	60S ribosomal protein L12 (RPL12B)	S.X.	H.G.	Please select
0.61	81.8	Gma.5586.1.S1_s_at	CD391234	-	-	2e-61	At1g07770	RPS15A (ribosomal protein s15a)	S.X.	H.G.	Please select
0.59	79.5	Gma.10678.1.S1_at	CD397832	-	-	2e-26	At3g59540	60S ribosomal protein L38 (RPL38B)	S.X.	H.G.	Please select
0.56	78.2	Gma.311.1.S1_at	CD413539	-	-	2e-30	At2g20450	60S ribosomal protein L14 (RPL14A)	S.X.	H.G.	Please select
0.47	66.6	GmaAffx.51433.1.S1_s_at	BE022395	-	-	2e-10	At4g15000	60S ribosomal protein L27 (RPL27C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.6	99.8	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
29.2	99.8	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
25.7	99.8	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
22.6	99.8	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
21.7	99.8	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
20.9	99.7	GSM147940	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
19.6	99.7	GSM147941	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
18.6	99.7	GSM147939	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
18.4	99.7	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
17.8	99.7	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	926	GmaAffx.89508.1.A1_s_at	CK606172	-	-	4e-1	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.52	0	749	GmaAffx.93094.1.S1_s_at	CF805936	-	-	5e+0	At3g05810	unknown protein	C.G.	S.X.	Please select
0.39	2e-131	470	Gma.2887.2.S1_x_at	BI701520	-	-	3e+0	At3g05810	unknown protein	C.G.	S.X.	Please select
0.19	5e-61	236	GmaAffx.90578.1.A1_s_at	CF806303	-	-	2e-25	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.18	4e-58	226	Gma.11022.1.S1_s_at	CD412255	-	-	1e-24	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.19	4e-55	216	GmaAffx.88833.1.S1_at	CK606547	-	-	3e-16	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.26	5e-39	163	Gma.2266.1.S1_s_at	BG839284	-	-	2e-48	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please select
0.11	8e-38	159	GmaAffx.1301.66.S1_at	CA802046	-	-	2e-11	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.10	3e-28	127	GmaAffx.58303.1.S1_at	BE610160	-	-	3e-10	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	1e-23	111	Arabidopsis thaliana	At4g33865	829529	40S ribosomal protein S29 (RPS29C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MAOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	3e-29	129	Hordeum vulgare	Contig3192_at	Contig3192	-	-	4e-22	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.18	1e-31	139	Oryza sativa	Os12g0508600	9640.m03145	-	-	3e-18	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	2e-20	101	Populus trichocarpa	PtpAffx.1672.3.A1_a_at	CV271667	phenylalanine amonnia lyase	-	1e-3	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	3e-40	167	Triticum aestivum	Ta.24613.1.S1_at	CA486115	-	-	4e-9	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.16	4e-27	121	Vitis vinifera	1608093_at	CD797597	hypothetical protein LOC100262886	-	5e-12	At3g43980	40S ribosomal protein S29 (RPS29A)	C.G.	S.X.	Please select
0.16	7e-39	161	Zea mays	Zm.14354.1.S1_at	CK370303	40S ribosomal protein S29 /// 40S ribosomal protein S29	-	2e-11	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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