Gene omics information

Query gene ID	Gma.2841.2.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.2841.2.S1_s_at	BM523133	-	-	2e-5	At4g10970	unknown protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.85246.2.S1_at	BM954924	-	-	2e-9	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.92769.1.S1_s_at	CF808494	-	-	1e-75	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	S.X.	H.G.	Please select
0.20	25.1	GmaAffx.91748.1.S1_s_at	CF807473	-	-	1e-102	At2g01970	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.06	9.0	GmaAffx.76737.1.S1_at	BF324681	-	-	4e-36	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select
0.03	5.8	GmaAffx.59637.1.S1_at	AI900257	-	-	3e+0	At5g05965	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.6	98.9	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM293413	95_1566.1Q.R153P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM293346	34_1550.1Q.R078P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM294293	45_3162.2I.R9I3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293561	74_2028.2A.R196P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM292744	8_1384.1J.R239P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM292768	30_C198.1K.R9K3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293982	37_2266.2F.R123P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.76	0	664	GmaAffx.66695.1.S1_at	BG156636	-	-	2e-5	At4g10970	unknown protein	C.G.	S.X.	Please select
0.04	6e-3	42	GmaAffx.42021.1.S1_at	BI700402	-	-	3e-1	At2g04420	nucleic acid binding	C.G.	S.X.	Please select
0.04	6e-3	42	Gma.12861.1.S1_at	CD393244	-	-	1e+0	At4g29330	DER1 (DERLIN-1)	C.G.	S.X.	Please select
0.06	9e-2	38	GmaAffx.59630.1.S1_x_at	BI892854	-	-	2e-1	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	C.G.	S.X.	Please select
0.03	9e-2	38	Gma.15488.1.S1_s_at	CD399398	-	-	2e-74	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	C.G.	S.X.	Please select
0.03	9e-2	38	Gma.15488.1.S1_at	CD399398	-	-	2e-74	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.CL2085Contig1_at	PsAffx.CL2085Contig1	-	-	6e+0	At4g11960	PGRL1B (PGR5-Like B)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C94000006_at	PsAffx.C94000006	-	-	3e-2	At1g65295	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C100000007_at	PsAffx.C100000007	-	-	1e-1	At4g39720	VQ motif-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-5	50	Arabidopsis thaliana	At4g10970	826698	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	HF08A16r_x_at	HF08A16r	-	-	3e+0	At5g38180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.7195.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	2e-8	59	Populus trichocarpa	PtpAffx.9156.2.S1_at	AJ779497	hypothetical protein	-	1e-1	At3g23130	SUP (SUPERMAN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.23017.1.S1_at	CA741706	-	-	6e+0	At1g40390	-	C.G.	S.X.	Please select
0.17	2e-8	57	Vitis vinifera	1607013_a_at	CA814207	hypothetical protein LOC100241044	-	1e-1	At4g14720	PPD2	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.8754.1.A1_at	BM334162	-	-	1e+0	At2g17787	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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