Gene omics information

Query gene ID	Gma.2802.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.9	Gma.2802.1.S1_at	CD396311	-	-	2e-29	At3g06810	IBR3 (IBA-RESPONSE 3)	S.X.	H.G.	Please select
0.83	92.5	Gma.1648.2.A1_a_at	CD404308	-	-	1e-4	At1g10820	unknown protein	S.X.	H.G.	Please select
0.83	92.5	Gma.8673.1.S1_at	BE821944	-	-	3e-114	At1g51720	glutamate dehydrogenase, putative	S.X.	H.G.	Please select
0.67	86.1	Gma.13242.1.S1_at	CD396483	NAC domain protein	-	1e-5	At5g64060	anac103 (Arabidopsis NAC domain containing protein 103)	S.X.	H.G.	Please select
0.61	81.8	Gma.1806.1.S1_at	BI971557	-	-	5e-26	At2g23980	ATCNGC6	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.661.1.S1_at	BI969786	-	-	2e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	98.0	GSM292373	47_C104.1F.R9F3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294571	41_3212.2L.R9L3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM293390	74_1588.1Q.R230P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM292258	78_C034.1B.R9B3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293127	40_1148.1O.R093P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292211	74-C018.1A.R9A3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292278	22_C090.1E.R9E3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293718	53_2144.2C.R109P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	36	PsAffx.C95000051_at	PsAffx.C95000051	-	-	8e+0	At5g26673	-	C.G.	S.X.	Please select
0.02	1e+0	36	HgAffx.4013.1.A1_at	CK348677	-	-	4e-1	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	C.G.	S.X.	Please select
0.01	1e+0	36	Gma.3125.1.S1_at	CD392634	-	-	8e-16	At5g57440	GS1	C.G.	S.X.	Please select
0.00	5e+0	34	GmaAffx.93648.1.S1_at	NC_003536.1	-	-	8e-2	At3g60380	-	C.G.	S.X.	Please select
0.01	5e+0	34	GmaAffx.73738.1.S1_at	BE805873	-	-	5e-3	At1g47490	ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)	C.G.	S.X.	Please select
0.02	5e+0	34	GmaAffx.35364.4.S1_at	AW706990	-	-	9e-13	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.01	2e+1	32	PsAffx.C63000015_at	PsAffx.C63000015	-	-	3e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.01	2e+1	32	PsAffx.C47000074_at	PsAffx.C47000074	-	-	2e-1	At4g28690	-	C.G.	S.X.	Please select
0.01	2e+1	32	PsAffx.C40000021_at	PsAffx.C40000021	-	-	8e-1	At2g45600	hydrolase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	2e-29	131	Arabidopsis thaliana	At3g06810	819865	IBR3 (IBA-RESPONSE 3)	Encodes a protein with similarity to acyl-CoA dehydrogenases. Mutations in IBR3 render plants resistant to indole-3-butryic acid, a putative storage form of the biologically active auxin IAA (indole-3-acetic acid). IBR3 is hypothesized to carry out the second step in a β-oxidation-like process of IBA metabolism in Arabidopsis. Though its subcellular location has not been determined, IBR3 has a peroxisomal targeting sequence and two other putative IBA metabolic enzymes (IBR1 and IBR10) can be found in this organelle. No specific enzymatic activity has been documented for IBR3, but double mutant analyses with CHY1 argue against a role for IBR3 in general fatty acid β-oxidation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	9e-27	121	Hordeum vulgare	Contig8274_at	Contig8274	-	-	6e-15	At3g06810	IBR3 (IBA-RESPONSE 3)	C.G.	S.X.	Please select
0.23	2e-33	145	Oryza sativa	Os07g0675000	AK065843.1	-	Acyl-CoA dehydrogenase, middle and N-terminaldomain containing protein	3e-26	At3g06810	IBR3 (IBA-RESPONSE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	3e-47	190	Populus trichocarpa	PtpAffx.208467.1.S1_at	pmrna16819	hypothetical protein	-	2e-98	At3g06810	IBR3 (IBA-RESPONSE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	4e-15	83	Triticum aestivum	Ta.25699.1.S1_at	CD373930	-	-	1e-9	At3g06810	IBR3 (IBA-RESPONSE 3)	C.G.	S.X.	Please select
0.15	1e-34	147	Vitis vinifera	1610636_at	BQ797158	similar to IBR3 (IBA-RESPONSE 3); acyl-CoA dehydrogenase/ oxidoreductase	-	6e-18	At3g06810	IBR3 (IBA-RESPONSE 3)	C.G.	S.X.	Please select
0.22	1e-22	107	Zea mays	Zm.15087.1.S1_at	BM350056	-	-	7e-14	At3g06810	IBR3 (IBA-RESPONSE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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