CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.27.1.S1_at

Gene name nodulin

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.27.1.S1_at X69156.1 nodulin - 8e-2 At5g17550 PEX19-2 S.X. H.G.
0.91 98.6 GmaAffx.77823.1.A1_at BE020011 - - 1e+1 At5g60340 maoC-like dehydratase domain-containing protein S.X. H.G.
0.91 98.6 Gma.5121.1.A1_at AW309540 - - 9e-1 At3g52620 unknown protein S.X. H.G.
0.91 98.6 GmaAffx.39680.1.S1_at BI700248 - - 1e+0 At3g06435 Expressed protein S.X. H.G.
0.83 92.5 GmaAffx.2446.1.S1_at AI973819 - - 3e-4 At3g10520 AHB2 (ARABIDOPSIS HAEMOGLOBIN 2) S.X. H.G.
0.73 88.9 Gma.8426.1.S1_at D13505.1 early nodulin - 2e-2 At3g15990 SULTR3 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
732.9 100.0 GSM292315 63_C080.1E.R9E2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
709.3 100.0 GSM292674 24_C163.1J.V7J1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
257.6 100.0 GSM292725 70_C172.1J.V7J2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
211.6 100.0 GSM292276 20_C079.1E.R9E2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
129.6 100.0 GSM292307 54_C083.1E.V7E2U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
81.1 100.0 GSM292634 61_C158.1I.SLI3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
68.1 100.0 GSM292721 67_C163.1J.V7J1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
65.2 100.0 GSM292280 25_1199.1E.R123L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
61.3 99.9 GSM292704 51_C171.1J.V7J2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
47.9 99.9 GSM292423 26_C116.1G.R9G2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 8e-117 420 GmaAffx.89715.1.A1_at CK606708 - - 5e-2 At5g17550 PEX19-2 C.G. S.X.
0.39 8e-117 420 GmaAffx.89715.1.S1_at CK606708 - - 5e-2 At5g17550 PEX19-2 C.G. S.X.
0.55 4e-66 252 Gma.14.1.S1_at D13502.1 early nodulin - 2e+0 At1g52415 - C.G. S.X.
0.03 2e+0 34 GmaAffx.80899.2.S1_at BE474062 - - 4e-9 At5g11950 protein homodimerization C.G. S.X.
0.03 2e+0 34 GmaAffx.35783.1.S1_at BQ296566 - - 9e-1 At1g26210 unknown protein C.G. S.X.
0.02 2e+0 34 GmaAffx.17752.1.S1_at BI784858 - - 1e-4 At4g27780 ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2) C.G. S.X.
0.01 7e+0 32 PsAffx.C61000052_at PsAffx.C61000052 - - 5e+0 At3g09200 60S acidic ribosomal protein P0 (RPP0B) C.G. S.X.
0.02 7e+0 32 PsAffx.C114000012_at PsAffx.C114000012 - - 6e+0 At2g20230 - C.G. S.X.
0.03 7e+0 32 HgAffx.5485.1.S1_at CD747939 - - 2e-1 At4g18490 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-2 38 Arabidopsis thaliana At5g17550 831621 PEX19-2 F:molecular_function unknown;P:peroxisome organization;C:peroxisome;MFOPB - - - C.G. S.X.
0.03 4e-2 38 Hordeum vulgare Contig12844_at Contig12844 - - 7e+0 At5g50830 unknown protein C.G. S.X.
0.03 1e+1 32 Oryza sativa Os05g0204400 9633.m01014 - - 4e+0 At4g30590 plastocyanin-like domain-containing protein C.G. S.X.
0.03 1e-1 38 Populus trichocarpa PtpAffx.73836.1.S1_at DN494663 - - 1e+1 At5g19315 - C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.80353.1.S1_at CA697845 - - 4e+0 At3g23360 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1622262_at CF214402 hypothetical protein LOC100254362 - 2e-20 At5g56750 Ndr family protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.4405.1.A1_at BG841902 vacuolar sorting protein 4b - 5e+0 At2g40790 ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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