Gene omics information

Query gene ID	Gma.2660.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	Gma.2660.1.S1_at	BE657176	-	-	9e-13	At1g69060	heat shock protein binding	S.X.	H.G.	Please select
0.67	86.1	Gma.16752.1.S1_at	CD416535	-	-	8e-10	At1g53190	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.53	74.2	Gma.8705.1.S1_at	BQ742642	-	-	1e-23	At1g65430	zinc finger protein-related	S.X.	H.G.	Please select
0.50	71.7	Gma.2520.1.S1_at	AW570245	-	-	2e-7	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	S.X.	H.G.	Please select
0.35	48.6	Gma.6058.1.A1_at	BE658507	-	-	3e+0	At3g04640	glycine-rich protein	S.X.	H.G.	Please select
0.32	43.7	Gma.8578.1.S1_at	BQ079840	-	-	4e-26	At3g60150	unknown protein	S.X.	H.G.	Please select
0.25	32.6	Gma.17071.1.S1_at	BE822434	-	-	6e-2	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	98.5	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.9	98.0	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.8	97.0	GSM182047	Whole Seed at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.7	96.8	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2	96.0	GSM191082	Soybean_Cotyledon_EN2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1	95.8	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.0	95.6	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.0	95.6	GSM191081	Soybean_Cotyledon_EN1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.0	95.6	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	36	PsAffx.CL231Contig1_at	PsAffx.CL231Contig1	-	-	1e+1	At2g07785	NADH-ubiquinone oxidoreductase, putative	C.G.	S.X.	Please select
0.02	1e+0	36	HgAffx.23948.1.S1_at	BF014582	-	-	2e+0	At5g03545	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	36	Gma.5302.1.S1_at	BG511103	bZIP transcription factor bZIP89	-	1e-5	At5g28770	BZO2H3	C.G.	S.X.	Please select
0.01	5e+0	34	PsAffx.C38000014_at	PsAffx.C38000014	-	-	3e-1	At5g35330	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	C.G.	S.X.	Please select
0.01	5e+0	34	HgAffx.8342.1.S1_at	CB380159	-	-	1e+0	At5g65180	-	C.G.	S.X.	Please select
0.02	5e+0	34	HgAffx.19006.1.S1_at	CB374913	-	-	3e+0	At5g65260	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select
0.02	5e+0	34	GmaAffx.82528.2.S1_at	BI702248	-	-	2e-4	At3g02640	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	34	GmaAffx.82528.1.S1_at	CA800460	-	-	5e-9	At3g02640	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	34	GmaAffx.82528.2.S1_s_at	BI702248	-	-	2e-4	At3g02640	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	9e-13	75	Arabidopsis thaliana	At1g69060	843238	heat shock protein binding	F:heat shock protein binding;P:biological_process unknown;C:plasma membrane;OMFBPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Hordeum vulgare	Contig19320_at	Contig19320	-	-	9e-1	At1g06475	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	38	Oryza sativa	OsAffx.23721.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	6e-18	93	Populus trichocarpa	PtpAffx.209023.1.S1_at	pmrna17873	hypothetical protein	-	3e-7	At1g69060	heat shock protein binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+0	34	Triticum aestivum	TaAffx.49997.3.S1_s_at	CA744881	Cryptochrome 2	-	1e+0	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	C.G.	S.X.	Please select
0.02	6e-2	38	Vitis vinifera	1609016_at	CD802400	-	-	8e-1	At1g23570	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	Zea mays	ZmAffx.480.1.A1_at	AI677621	transmembrane 9 superfamily protein member 4	-	8e-1	At1g18871	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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