CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.2607.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.9 Gma.2607.2.S1_at BF595916 - - 9e-1 At5g47230 ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5) S.X. H.G.
0.44 63.3 GmaAffx.61984.1.S1_at BM523130 - - 4e-9 At5g18810 SCL28 S.X. H.G.
0.44 63.3 Gma.15407.4.S1_at AW185051 - - 1e-21 At5g52040 ATRSP41 S.X. H.G.
0.35 48.6 GmaAffx.86664.1.S1_at BI469930 - - 4e-32 At2g43770 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.33 46.1 GmaAffx.15284.1.S1_at BE822730 - - 6e+0 At1g21880 LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) S.X. H.G.
0.29 39.0 GmaAffx.82.1.S1_at CD415578 - - 9e-8 At3g10210 - S.X. H.G.
0.12 15.1 PsAffx.psHB027xN03f_at PsAffx.psHB027xN03f - - 4e+0 At5g47075 LCR20 (Low-molecular-weight cysteine-rich 20) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 99.4 GSM209595 susceptible_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
10.3 99.3 GSM209594 resistant_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.6 98.9 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
7.3 98.9 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
6.5 98.7 GSM209585 resistant_12hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.4 98.6 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
6.3 98.6 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
6.2 98.6 GSM209583 resistant_6hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.6 98.3 GSM209596 resistant_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.4 98.2 GSM292893 68_C210.1L.R9L2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 36 PsAffx.C200000019_at PsAffx.C200000019 - - 1e+0 At5g19875 unknown protein C.G. S.X.
0.04 3e-1 36 HgAffx.15231.1.S1_at CB281763 - - 2e-1 At1g07660 histone H4 C.G. S.X.
0.05 3e-1 36 GmaAffx.63691.1.S1_at BG649946 - - 3e+0 At5g46871 - C.G. S.X.
0.01 1e+0 34 PsAffx.C1000231_at PsAffx.C1000231 - - 4e-1 At3g18780 ACT2 (ACTIN 2) C.G. S.X.
0.03 1e+0 34 GmaAffx.11383.1.S1_at BE822014 - - 3e-1 At3g27960 kinesin light chain-related C.G. S.X.
0.03 1e+0 34 Gma.14823.1.S1_at AW831266 - - 5e+0 At4g35770 SEN1 (SENESCENCE 1) C.G. S.X.
0.03 5e+0 32 PsAffx.psMA004xN20f_at PsAffx.psMA004xN20f - - 5e+0 At5g08290 YLS8 C.G. S.X.
0.02 5e+0 32 PsAffx.C9000015_at PsAffx.C9000015 - - 3e+0 At2g41260 M17 C.G. S.X.
0.00 5e+0 32 PsAffx.C6000190_at PsAffx.C6000190 - - 4e+0 At1g60030 xanthine/uracil permease family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-1 34 Arabidopsis thaliana At5g47230 834770 ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-5). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. - - - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HO01F15S_at HO01F15S - - 1e-3 At3g54680 proteophosphoglycan-related C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.10327.1.S1_x_at - - - 0 C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.202909.1.S1_at pmrna5763 hypothetical protein - 2e-5 At3g22760 SOL1 C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.6358.1.S1_at CA687432 - - 2e-1 At5g36000 unknown protein C.G. S.X.
0.05 4e+0 30 Vitis vinifera 1618787_at CF212293 hypothetical protein LOC100245562 - 2e-21 At5g56940 ribosomal protein S16 family protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.1714.1.S1_at AW400109 pre-mRNA branch site p14-like protein - 2e-21 At5g12190 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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