CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.2569.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.88 93.4 Gma.2569.1.S1_s_at CD414265 - - 1e+0 At4g38330 - S.X. H.G.
0.89 93.5 Gma.2569.1.S1_at CD414265 - - 1e+0 At4g38330 - S.X. H.G.
0.71 87.8 Gma.14977.1.S1_at CD391055 - - 1e-42 At4g20360 ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) S.X. H.G.
0.69 86.8 Gma.16833.1.S1_s_at L34841.1 fructose-1,6-bisphosphatase - 3e-28 At3g54050 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative S.X. H.G.
0.67 86.1 Gma.10851.1.S1_at CD396250 - - 2e-51 At1g32060 PRK (PHOSPHORIBULOKINASE) S.X. H.G.
0.67 86.1 Gma.5672.3.S1_a_at CD398658 - - 3e-34 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) S.X. H.G.
0.67 86.1 Gma.7690.1.S1_at CD417505 - - 1e+0 At5g03030 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.63 82.9 Gma.13868.2.S1_a_at BQ298798 glyceraldehyde-3-phosphate dehydrogenase B subunit - 6e-43 At1g42970 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) S.X. H.G.
0.62 82.1 Gma.10788.1.S1_at CD397159 Chloroplastic ATP synthase gamma subunit (ATPC) mRNA, partial cds; nuclear gene for chloroplast product - 7e-26 At4g04640 ATPC1 S.X. H.G.
0.59 79.5 Gma.17726.1.S1_at BE820041 - - 3e-37 At1g09340 CRB (CHLOROPLAST RNA BINDING) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
125.7 100.0 GSM238030 Soybean-2601R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
112.6 100.0 GSM238041 Soybean-Bayfield-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
110.3 100.0 GSM238053 Soybean-PS46R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
95.7 100.0 GSM238057 Soybean-S03W4-1-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
93.7 100.0 GSM209580 resistant_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
90.6 100.0 GSM238049 Soybean-Mandarin-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
89.0 100.0 GSM238039 Soybean-Bayfield-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
86.6 100.0 GSM238056 Soybean-PS46R-5-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
85.1 100.0 GSM238036 Soybean-Bayfield-1-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
82.9 100.0 GSM238054 Soybean-PS46R-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.93 0 1277 Gma.2569.1.S1_at CD414265 - - 1e+0 At4g38330 - C.G. S.X.
0.73 2e-154 545 Gma.10151.1.S1_at CD401876 - - 3e-1 At1g01840 unknown protein C.G. S.X.
0.03 5e-1 36 GmaAffx.6216.1.S1_at BG316337 - - 3e+0 At3g32260 - C.G. S.X.
0.02 2e+0 34 PsAffx.CL2575Contig1_at PsAffx.CL2575Contig1 - - 6e+0 At4g27810 unknown protein C.G. S.X.
0.01 2e+0 34 PsAffx.C93000003_at PsAffx.C93000003 - - 4e-1 At1g19600 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.01 2e+0 34 PsAffx.C55000077_at PsAffx.C55000077 - - 3e+0 At4g03420 unknown protein C.G. S.X.
0.02 2e+0 34 PsAffx.C29000078_at PsAffx.C29000078 - - 2e+0 At1g20875 unknown protein C.G. S.X.
0.02 2e+0 34 PsAffx.C230000003_at PsAffx.C230000003 - - 1e+0 At5g11680 unknown protein C.G. S.X.
0.01 2e+0 34 PsAffx.C2000152_s_at PsAffx.C2000152 - - 4e-3 At3g18295 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At4g38330 829990 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;P - - - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig25984_at Contig25984 - - 9e-1 At4g24380 unknown protein C.G. S.X.
0.04 3e+0 34 Oryza sativa OsAffx.3713.1.S1_at - - - 0 C.G. S.X.
0.18 2e-16 87 Populus trichocarpa PtpAffx.21097.1.S1_at CV276815 hypothetical protein - 2e-2 At3g47070 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.11252.2.S1_at CA675982 - - 2e+0 At4g24240 WRKY7 C.G. S.X.
0.20 3e-17 87 Vitis vinifera 1608132_at CA809139 hypothetical protein LOC100265554 - 1e+0 At1g49000 unknown protein C.G. S.X.
0.04 1e-2 40 Zea mays ZmAffx.510.1.A1_at AI692008 hypothetical protein LOC100273006 - 3e+0 At4g14380 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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