Gene omics information

Query gene ID Gma.2546.1.S1_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8793.2Gma.2546.1.S1_atCA783454--6e-35At3g62600ATERDJ3BS.X.H.G.
0.5878.8GmaAffx.13865.1.S1_atBI470072--8e-4At5g57300UbiE/COQ5 methyltransferase family proteinS.X.H.G.
0.5374.2GmaAffx.92088.1.S1_atCF807813--6e-8At1g51650ATP synthase epsilon chain, mitochondrialS.X.H.G.
0.5273.1GmaAffx.88869.1.A1_s_atCK605814--6e-18At1g34130STT3B (staurosporin and temperature sensitive 3-like b)S.X.H.G.
0.4766.6GmaAffx.52385.1.S1_atAW101495--7e-11At1g67785unknown proteinS.X.H.G.
0.4665.5Gma.3672.2.S1_atCD407926--3e-89At1g34130STT3B (staurosporin and temperature sensitive 3-like b)S.X.H.G.
0.4665.5Gma.2944.1.S1_atBM270186--4e-15At4g13520SMAP1 (SMALL ACIDIC PROTEIN 1)S.X.H.G.
0.4563.9Gma.16925.1.A1_atBG653419--2e-1At5g66340unknown proteinS.X.H.G.
0.4360.6Gma.12386.1.S1_atCD401243--3e-1At5g59880ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)S.X.H.G.
0.4360.6Gma.4444.3.S1_atCD412673--3e-18At4g18040EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
72.9100.0GSM191090Soybean_Cotyledon_OI2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stage
48.699.9GSM191089Soybean_Cotyledon_OI1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stage
39.499.9GSM182044Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stage
33.599.9GSM201119Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
30.299.8GSM201130Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stage
29.699.8GSM191080Soybean_Cotyledon_ES2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stage
28.499.8GSM191088Soybean_Cotyledon_II2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stage
28.399.8GSM147951Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stage
26.999.8GSM201118Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
26.499.8GSM191082Soybean_Cotyledon_EN2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stage
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.029e-136HgAffx.9465.1.S1_atCB379037--7e-1At1g27290unknown proteinC.G.S.X.
0.029e-136GmaAffx.93629.1.S1_s_atCF809354--4e-62At5g5924040S ribosomal protein S8 (RPS8B)C.G.S.X.
0.029e-136GmaAffx.21302.1.S1_atBU547335--7e-1At3g57785unknown proteinC.G.S.X.
0.019e-136Gma.8864.1.S1_atAW350534--5e-2At2g44500unknown proteinC.G.S.X.
0.013e+034PsAffx.C7000164_atPsAffx.C7000164--5e-1At1g06350fatty acid desaturase family proteinC.G.S.X.
0.003e+034PsAffx.C145000008_atPsAffx.C145000008--9e-1At4g15280UGT71B5 (UDP-GLUCOSYL TRANSFERASE 71B5)C.G.S.X.
0.023e+034HgAffx.14036.1.S1_atCB373897--4e+0At4g03298unknown proteinC.G.S.X.
0.023e+034GmaAffx.90642.1.S1_s_atCF809113--3e-17At1g80920J8C.G.S.X.
0.023e+034GmaAffx.8320.1.S1_atBG157576--4e-13At1g79440ALDH5F1C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.226e-35149Arabidopsis thalianaAt3g62600825434ATERDJ3BJ domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.---C.G.S.X.
0.221e-1273Hordeum vulgareContig7280_atContig7280--3e-12At3g62600ATERDJ3BC.G.S.X.
0.246e-21103Oryza sativaOs05g0156500AK062718.1-Apobec-1 binding protein 22e-10At3g62600ATERDJ3BC.G.S.X.
0.332e-97357Populus trichocarpaPtpAffx.80014.1.S1_atCV264509hypothetical protein-1e-24At3g62600ATERDJ3BC.G.S.X.
0.197e-1065Triticum aestivumTa.8128.1.S1_x_atBQ161382--4e-12At3g62600ATERDJ3BC.G.S.X.
0.394e-107387Vitis vinifera1620520_s_atBQ797142hypothetical protein LOC100252105-2e-23At3g62600ATERDJ3BC.G.S.X.
0.251e-1583Zea maysZm.5074.1.A1_atAI600716--5e-14At3g62600ATERDJ3BC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage