Gene omics information

Query gene ID	Gma.2534.2.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.2534.2.S1_s_at	CD393721	-	-	2e-76	At4g02890	UBQ14	S.X.	H.G.	Please select
0.71	87.8	GmaAffx.91487.1.S1_x_at	CF807212	elongation factor 1A SMV resistance-related protein	-	2e-114	At5g60390	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.71	87.8	GmaAffx.91487.1.S1_at	CF807212	elongation factor 1A SMV resistance-related protein	-	2e-114	At5g60390	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.67	86.1	Gma.17246.1.S1_s_at	CD402136	-	-	2e-12	At1g26880	60S ribosomal protein L34 (RPL34A)	S.X.	H.G.	Please select
0.63	82.9	Gma.4208.2.S1_s_at	CD401340	-	-	2e-34	At1g22780	PFL (POINTED FIRST LEAVES)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.88908.1.A1_x_at	CK605775	-	-	2e-28	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.9	99.8	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
22.8	99.8	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
21.4	99.8	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
16.4	99.6	GSM147940	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
15.2	99.6	GSM147951	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
14.6	99.6	GSM147953	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
12.6	99.5	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
12.5	99.5	GSM147944	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
11.4	99.4	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
11.1	99.4	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	6e-179	626	Gma.2534.1.S1_s_at	BI967545	Ubiquitin	-	2e-140	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.48	1e-177	623	GmaAffx.93644.1.S1_x_at	CF806647	Ubiquitin	-	7e-139	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.34	9e-169	593	GmaAffx.89861.1.A1_at	CK606562	-	-	3e-127	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.39	9e-169	593	GmaAffx.89861.1.S1_s_at	CK606562	Ubiquitin	-	3e-127	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.28	7e-77	287	Gma.7789.1.S1_at	BI321596	-	-	0	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.42	1e-72	274	GmaAffx.89861.2.A1_at	CK605923	-	-	1e-121	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please select
0.51	2e-71	270	Gma.2534.3.S1_x_at	AI443822	-	-	2e-85	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please select
0.35	2e-67	256	Gma.10883.1.S1_at	CD399178	-	-	2e-96	At1g65350	UBQ13	C.G.	S.X.	Please select
0.43	4e-66	252	Gma.10883.2.S1_s_at	AW350627	-	-	7e-71	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	2e-76	286	Arabidopsis thaliana	At4g02890	828148	UBQ14	Polyubiquitin gene containing 4 ubiquitin repeats.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.53	3e-89	327	Hordeum vulgare	Contig1110_at	Contig1110	-	-	5e-102	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please select
0.35	2e-84	313	Oryza sativa	Os02g0161900	AK101547.1	-	Ubiquitin	0	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.52	1e-72	274	Populus trichocarpa	Ptp.2583.2.S1_x_at	BP934515	-	-	1e-71	At4g02890	UBQ14	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	2e-92	339	Triticum aestivum	Ta.28553.4.S1_x_at	BJ254775	-	-	3e-132	At4g02890	UBQ14	C.G.	S.X.	Please select
0.49	1e-74	278	Vitis vinifera	1620334_at	CF205130.1	-	-	3e-81	At5g03240	UBQ3 (POLYUBIQUITIN 3)	C.G.	S.X.	Please select
0.34	3e-76	284	Zea mays	Zm.7727.4.S1_s_at	CF972403	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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