Gene omics information

Query gene ID	Gma.2520.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.2520.1.S1_at	AW570245	-	-	2e-7	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	S.X.	H.G.	Please select
0.67	86.1	Gma.8705.1.S1_at	BQ742642	-	-	1e-23	At1g65430	zinc finger protein-related	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.42985.1.S1_s_at	AW781209	-	-	3e-22	At4g05330	AGD13 (ARF-GAP domain 13)	S.X.	H.G.	Please select
0.36	50.8	Gma.8578.1.S1_at	BQ079840	-	-	4e-26	At3g60150	unknown protein	S.X.	H.G.	Please select
0.35	48.6	Gma.2660.1.S1_at	BE657176	-	-	9e-13	At1g69060	heat shock protein binding	S.X.	H.G.	Please select
0.33	46.1	Gma.6902.1.S1_a_at	CD396278	-	-	1e-12	At5g01010	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	96.4	GSM293600	30_2081.2B.R035L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292793	53_C197.1K.R9K3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM244797	14_VP9.I2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.2	96.0	GSM244909	3_VP9.I3L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.1	95.8	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM244934	9_SLO.I2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.1	95.8	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292161	14-C017.1A.R9A3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292171	27-C007.1A.V7A2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292284	31_1193.1E.R117L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	5e-12	73	GmaAffx.78974.1.S1_at	BI425899	-	-	6e-6	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select
0.11	2e-5	52	GmaAffx.91547.1.S1_at	CF807272	-	-	3e-4	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	C.G.	S.X.	Please select
0.04	1e-3	46	GmaAffx.24880.1.S1_at	CA935325	-	-	4e-6	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.59784.1.S1_at	BG653475	-	-	5e-7	At5g19320	RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2)	C.G.	S.X.	Please select
0.01	4e+0	34	GmaAffx.83601.1.S1_at	BE824325	-	-	1e+0	At3g53600	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	4e+0	34	GmaAffx.76430.1.S1_at	BQ627845	-	-	1e-2	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select
0.01	4e+0	34	GmaAffx.68044.1.S1_at	BG790431	-	-	3e-15	At2g25320	-	C.G.	S.X.	Please select
0.01	4e+0	34	Gma.9628.1.S1_at	CD414555	-	-	6e-1	At5g04920	vacuolar protein sorting 36 family protein / VPS36 family protein	C.G.	S.X.	Please select
0.01	4e+0	34	Gma.8422.1.A1_at	D50869.1	mitotic cyclin a2-type	-	2e-27	At5g25380	CYCA2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-7	57	Arabidopsis thaliana	At2g46500	819260	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:protein modification process;C:cellular_component unknown;MPOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	7e-12	71	Hordeum vulgare	Contig2297_at	Contig2297	-	-	7e-5	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	C.G.	S.X.	Please select
0.07	2e-6	56	Oryza sativa	Os06g0340600	AK100224.1	-	Phosphatidylinositol 3- and 4-kinase domaincontaining protein	2e-5	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	2e-54	214	Populus trichocarpa	PtpAffx.83113.2.S1_a_at	DN500467	hypothetical protein	-	1e-12	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	9e-13	75	Triticum aestivum	Ta.14434.1.S1_at	CK193800	-	-	6e-6	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	C.G.	S.X.	Please select
0.20	2e-14	79	Vitis vinifera	1612958_at	CF512608	hypothetical protein LOC100249570	-	3e-14	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select
0.07	2e-5	50	Zea mays	Zm.2346.2.A1_x_at	CA401098	phosphatidylinositol 3- and 4-kinase family protein	-	6e-18	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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