CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.2503.1.S1_s_at

Gene name oxidoreductase /// conversion of hydroxypyruvate to glycerate

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.2503.1.S1_s_at AF503361.1 oxidoreductase /// conversion of hydroxypyruvate to glycerate - 6e-94 At1g68010 HPR S.X. H.G.
0.83 92.5 Gma.7210.1.S1_at BE822041 - - 3e-52 At4g11960 PGRL1B (PGR5-Like B) S.X. H.G.
0.80 91.5 Gma.8182.1.S1_a_at CD401769 - - 5e-12 At1g65230 unknown protein S.X. H.G.
0.67 86.1 Gma.10620.1.S1_at AF503360.1 conversion of hydroxypyruvate to glycerate - 4e-89 At1g68010 HPR S.X. H.G.
0.67 86.1 Gma.7309.1.S1_at CD396548 peroxisomal glycolate oxidase - 1e-113 At3g14415 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative S.X. H.G.
0.50 71.7 Gma.2503.1.S1_at AF503361.1 oxidoreductase - 6e-94 At1g68010 HPR S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
90.9 100.0 GSM238057 Soybean-S03W4-1-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
90.1 100.0 GSM245934 Leaf_Water Control_Rep 2_48 h After Treatment GSE9730 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
87.2 100.0 GSM245935 Leaf_Water Control_Rep 3_48 h After Treatment GSE9730 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
84.8 100.0 GSM245933 Leaf_Water Control_Rep 1_48 h After Treatment GSE9730 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
75.2 100.0 GSM238041 Soybean-Bayfield-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
71.7 100.0 GSM238053 Soybean-PS46R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
68.3 100.0 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
68.3 100.0 GSM238059 Soybean-S03W4-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
67.7 100.0 GSM238030 Soybean-2601R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
67.1 100.0 GSM209580 resistant_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 2726 Gma.2503.1.S1_at AF503361.1 oxidoreductase - 6e-94 At1g68010 HPR C.G. S.X.
0.90 0 2177 Gma.10620.1.S1_at AF503360.1 conversion of hydroxypyruvate to glycerate - 4e-89 At1g68010 HPR C.G. S.X.
0.02 1e+0 36 Gma.17730.1.A1_at BU927274 - - 2e-5 At1g31930 XLG3 (extra-large GTP-binding protein 3) C.G. S.X.
0.01 4e+0 34 PsAffx.CL410Contig1_at PsAffx.CL410Contig1 - - 9e+0 At3g21850 ASK9 (ARABIDOPSIS SKP1-LIKE 9) C.G. S.X.
0.01 4e+0 34 PsAffx.C60000016_at PsAffx.C60000016 - - 6e+0 At5g47870 unknown protein C.G. S.X.
0.01 4e+0 34 PsAffx.C170000027_at PsAffx.C170000027 - - 6e-1 At5g56950 NAP1 C.G. S.X.
0.02 4e+0 34 HgAffx.9308.1.S1_at CB379193 - - 3e-1 At1g23670 unknown protein C.G. S.X.
0.02 4e+0 34 GmaAffx.91857.1.S1_s_at CF807581 - - 7e-2 At4g06634 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 4e+0 34 GmaAffx.91857.1.S1_at CF807581 - - 7e-2 At4g06634 zinc finger (C2H2 type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 6e-94 345 Arabidopsis thaliana At1g68010 843129 HPR Encodes hydroxypyruvate reductase. - - - C.G. S.X.
0.22 7e-24 111 Hordeum vulgare Contig2515_at Contig2515 - - 6e-54 At1g68010 HPR C.G. S.X.
0.13 1e-22 109 Oryza sativa Os02g0101500 AK067642.1 - Hydroxypyruvate reductase (EC 1.1.1.29) 7e-49 At1g68010 HPR C.G. S.X.
0.61 1e-157 557 Populus trichocarpa PtpAffx.3758.1.S1_at CV278392 hypothetical protein - 1e-119 At1g68010 HPR C.G. S.X.
0.15 4e-18 93 Triticum aestivum Ta.28775.1.S1_at CA680217 - - 5e-39 At1g68010 HPR C.G. S.X.
0.64 5e-178 623 Vitis vinifera 1617382_s_at BQ799139 hypothetical protein LOC100262344 - 6e-174 At1g68010 HPR C.G. S.X.
0.12 6e-21 101 Zea mays Zm.17494.1.A1_at CK145115 hypothetical protein LOC100193709 - 3e-20 At1g68010 HPR C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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