Gene omics information

Query gene ID	Gma.2457.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.1	Gma.2457.1.S1_at	BI967559	-	-	2e+0	At1g61795	-	S.X.	H.G.	Please select
0.78	90.6	Gma.4927.1.S1_at	BG510284	-	-	7e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.71	87.8	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.63	82.9	GmaAffx.77778.1.S1_at	AW185540	-	-	5e+0	At5g52480	-	S.X.	H.G.	Please select
0.55	76.3	Gma.11238.1.S1_a_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.93103.1.S1_s_at	CF808828	-	-	5e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.92184.1.S1_s_at	CF807909	-	-	3e-1	At2g16900	-	S.X.	H.G.	Please select
0.48	67.7	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.33296.1.S1_at	BM522949	-	-	4e-4	At1g68710	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.37	51.7	Gma.1824.1.S1_at	BI469795	-	-	7e-16	At5g26030	FC1 (ferrochelatase 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.9	99.7	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.6	99.6	GSM292274	19_C089.1E.R9E3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.5	99.5	GSM292292	39_C075.1E.R9E1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.2	99.5	GSM244934	9_SLO.I2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
10.4	99.3	GSM292289	36_C081.1E.SLE2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.0	99.3	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.5	99.2	GSM292408	12_1265.1G.R168L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.4	99.2	GSM244874	32_CON.I2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
9.4	99.2	GSM292284	31_1193.1E.R117L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.2	99.2	GSM293887	38_2229.2E.R022L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	6e-20	99	Gma.13230.1.A1_at	CD396073	-	-	2e-1	At4g24805	methyltransferase	C.G.	S.X.	Please select
0.21	1e-17	91	Gma.15135.1.S1_at	BU548448	-	-	2e-4	At1g03740	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	C.G.	S.X.	Please select
0.06	5e-5	50	GmaAffx.92548.1.S1_at	CF808273	-	-	3e-1	At4g10010	protein kinase family protein	C.G.	S.X.	Please select
0.06	5e-5	50	GmaAffx.92548.1.S1_s_at	CF808273	-	-	3e-1	At4g10010	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e-1	38	GmaAffx.61076.1.S1_at	CA783359	-	-	9e-1	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	C.G.	S.X.	Please select
0.03	7e-1	36	GmaAffx.78344.1.S1_at	BM886517	-	-	1e-1	At3g42628	phosphoenolpyruvate carboxylase-related / PEP carboxylase-related	C.G.	S.X.	Please select
0.03	3e+0	34	GmaAffx.89702.1.A1_at	CK606092	-	-	2e-1	At5g18290	SIP1	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.4908.1.A1_at	BI969732	-	-	3e+0	Atcg00150	-	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.37161.1.S1_at	BM308422	-	-	7e-1	At5g37890	seven in absentia (SINA) protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g61795	5007827	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-2	38	Hordeum vulgare	HZ36N03r_at	HZ36N03r	-	-	5e+0	At5g58900	myb family transcription factor	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os.7574.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-1	36	Populus trichocarpa	PtpAffx.132322.1.A1_a_at	CV241725	hypothetical protein	-	6e-6	At1g53050	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e-1	36	Triticum aestivum	Ta.28778.1.S1_at	AJ604461	-	-	7e-1	At1g64340	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1612050_at	CF208838	-	-	8e-5	At5g24090	acidic endochitinase (CHIB1)	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.5948.2.A1_at	BE643594	-	-	1e+1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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