CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.2308.1.S1_s_at

Gene name isoflavone synthase 2

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.2308.1.S1_s_at AF022462.1 isoflavone synthase 2 - 6e-2 At1g67195 MIR414 (MICRORNA 414) S.X. H.G.
0.91 98.6 Gma.4300.3.S1_x_at AI443042 chalcone synthase - 1e-5 At5g13930 TT4 (TRANSPARENT TESTA 4) S.X. H.G.
0.83 92.5 GmaAffx.92722.1.S1_at CF807561 2-hydroxyisoflavanone dehydratase - 6e-1 At2g30050 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.83 92.5 GmaAffx.37677.1.S1_s_at BE022626 HIDH mRNA for 2-hydroxyisoflavanone dehydratase - 3e-1 At2g30050 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.77 90.3 Gma.4300.1.S1_s_at S46989.1 chalcone synthase - 5e-29 At5g13930 TT4 (TRANSPARENT TESTA 4) S.X. H.G.
0.77 90.3 Gma.4300.3.S1_s_at AI443042 chalcone synthase - 1e-5 At5g13930 TT4 (TRANSPARENT TESTA 4) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.6 99.2 GSM293553 67_3017.2A.R9A3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.1 99.2 GSM171703 4_W.E.I.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.9 99.2 GSM293226 15_C065.1P.R9P2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.2 99.0 GSM171699 3_W.I.I.3, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.2 99.0 GSM171647 21_W.I.I.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.7 99.0 GSM171714 7_V.I.I.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.7 99.0 GSM171632 18_W.E.I.3, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.2 98.9 GSM294151 16_3139.2H.R9H3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9 98.8 GSM171610 13_V.A.I.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.8 98.7 GSM171702 4_V.E.I.5, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.80 0 2266 Gma.4206.1.S1_s_at AF195798.1 isoflavone synthase 1 - 2e-1 At4g15360 CYP705A3 C.G. S.X.
0.01 9e-2 40 PsAffx.C12000088_s_at PsAffx.C12000088 - - 8e-2 At3g59090 - C.G. S.X.
0.01 9e-2 40 Gma.8425.1.S1_s_at D83968.1 - - 4e-3 At5g06900 CYP93D1 C.G. S.X.
0.01 9e-2 40 Gma.2911.2.S1_a_at BU926887 - - 2e-9 At4g26110 NAP1 C.G. S.X.
0.01 3e-1 38 PsAffx.C5000064_at PsAffx.C5000064 - - 6e+0 At4g37720 ATPSK6 (PHYTOSULFOKINE 6 PRECURSOR) C.G. S.X.
0.01 3e-1 38 Gma.154.1.S1_at Y10490.1 - - 1e-2 At3g26180 CYP71B20 C.G. S.X.
0.01 1e+0 36 PsAffx.C5000050_at PsAffx.C5000050 - - 4e+0 At2g20835 unknown protein C.G. S.X.
0.00 1e+0 36 PsAffx.C46000086_at PsAffx.C46000086 - - 3e+0 At5g46290 KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I) C.G. S.X.
0.01 1e+0 36 HgAffx.7838.1.S1_at CB824373 - - 1e-3 At1g67195 MIR414 (MICRORNA 414) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 40 Arabidopsis thaliana At1g67195 3767655 MIR414 (MICRORNA 414) Potential miRNA (MIR414) - - - C.G. S.X.
0.01 3e-2 40 Hordeum vulgare Contig9381_at Contig9381 - - 2e+0 At5g50500 unknown protein C.G. S.X.
0.02 1e-1 40 Oryza sativa Os03g0840400 9631.m06161 - Myb, DNA-binding domain containing protein 1e+0 At3g33494 unknown protein C.G. S.X.
0.03 9e-2 40 Populus trichocarpa PtpAffx.216782.1.S1_at pmrna31779 hypothetical protein - 2e-19 At5g06900 CYP93D1 C.G. S.X.
0.02 6e-2 40 Triticum aestivum Ta.5215.2.S1_x_at CA638463 - - 2e-1 At1g05420 OFP12 (OVATE FAMILY PROTEIN 12) C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1620536_at CF200887.1 - - 7e-2 At3g49630 2-oxoacid-dependent oxidase, putative C.G. S.X.
0.01 3e-2 40 Zea mays Zm.9120.1.A1_at BM348766 - - 9e-2 At3g25572 CPuORF11 (Conserved peptide upstream open reading frame 11) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage