Gene omics information

Query gene ID	Gma.2281.1.S1_x_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	99.1	Gma.2281.1.S1_x_at	BI317540	-	-	1e-4	At5g27200	ACP5 (acyl carrier protein 5)	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.84535.2.S1_at	BI320818	-	-	2e-6	At5g25940	early nodulin-related	S.X.	H.G.	Please select
0.51	72.3	Gma.1488.2.S1_at	CD390319	-	-	1e-96	At5g08290	YLS8	S.X.	H.G.	Please select
0.50	71.7	Gma.2627.1.S1_at	CD416014	-	-	4e-2	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.92088.1.S1_at	CF807813	-	-	6e-8	At1g51650	ATP synthase epsilon chain, mitochondrial	S.X.	H.G.	Please select
0.34	47.2	GmaAffx.16421.1.A1_at	AW348619	-	-	5e-1	At2g47340	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.70057.1.S1_s_at	BU765822	-	-	3e+0	At2g21560	unknown protein	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.73401.1.S1_x_at	BI971895	Chorismate synthase	-	1e+1	At5g42797	LCR28 (Low-molecular-weight cysteine-rich 28)	S.X.	H.G.	Please select
0.28	39.0	Gma.4219.1.S1_at	CD400117	-	-	8e-18	At5g47570	unknown protein	S.X.	H.G.	Please select
0.28	39.0	GmaAffx.66239.1.S1_at	AW101381	-	-	8e+0	At5g60820	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.4	99.9	GSM201114	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
29.3	99.8	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
27.5	99.8	GSM201110	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
26.1	99.8	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
24.8	99.8	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
24.8	99.8	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
22.6	99.8	GSM201112	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
21.4	99.8	GSM201113	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
19.8	99.7	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
16.9	99.7	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	0	1467	Gma.2281.1.S1_at	BI317540	-	-	1e-4	At5g27200	ACP5 (acyl carrier protein 5)	C.G.	S.X.	Please select
0.43	2e-90	333	GmaAffx.1615.1.S1_at	BQ080106	-	-	5e-5	At1g54630	ACP3 (ACYL CARRIER PROTEIN 3)	C.G.	S.X.	Please select
0.36	2e-31	137	GmaAffx.91287.1.S1_s_at	CF807012	-	-	2e-5	At5g27200	ACP5 (acyl carrier protein 5)	C.G.	S.X.	Please select
0.33	2e-31	137	GmaAffx.1968.1.S1_at	BE657555	-	-	2e-5	At5g27200	ACP5 (acyl carrier protein 5)	C.G.	S.X.	Please select
0.14	1e-29	131	Gma.16891.1.S1_at	CD413822	-	-	3e-1	At5g27210	-	C.G.	S.X.	Please select
0.12	1e-14	81	Gma.4230.1.S1_at	BE820796	-	-	3e-11	At5g27200	ACP5 (acyl carrier protein 5)	C.G.	S.X.	Please select
0.16	1e-14	81	Gma.2291.1.S1_at	BG237132	-	-	7e-8	At3g05020	ACP1 (acyl carrier protein 1)	C.G.	S.X.	Please select
0.04	7e-7	56	Gma.17710.3.A1_at	CD392219	-	-	8e-21	At1g54630	ACP3 (ACYL CARRIER PROTEIN 3)	C.G.	S.X.	Please select
0.02	2e-1	38	GmaAffx.69148.1.S1_at	BQ742343	-	-	2e-11	At2g32320	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-4	48	Arabidopsis thaliana	At5g27200	832778	ACP5 (acyl carrier protein 5)	encodes an acyl carrier protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	4e-6	52	Hordeum vulgare	Contig3015_at	Contig3015	-	-	4e-5	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	C.G.	S.X.	Please select
0.07	1e-9	65	Oryza sativa	Os03g0856300	AK108342.1	-	Acyl carrier protein, chloroplast precursor (ACP)(ACP09) (Clone 22C01)	5e-6	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	1e-23	111	Populus trichocarpa	PtpAffx.160019.1.A1_s_at	CV245436	hypothetical protein	-	2e-9	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e-1	36	Triticum aestivum	Ta.6568.2.S1_x_at	CK197627	-	-	8e-2	At3g05020	ACP1 (acyl carrier protein 1)	C.G.	S.X.	Please select
0.17	1e-20	99	Vitis vinifera	1610812_at	CD801696	hypothetical protein LOC100257302	-	5e-13	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	C.G.	S.X.	Please select
0.05	3e-6	52	Zea mays	Zm.69.1.A1_at	CF019994	-	-	4e-4	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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