Gene omics information

Query gene ID	Gma.2261.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.8	Gma.2261.1.S1_s_at	CA784522	-	-	9e-18	At3g11410	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	S.X.	H.G.	Please select
0.53	74.2	Gma.18092.1.A1_at	CD392886	-	-	6e+0	At4g14110	COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.43544.1.S1_at	CD391404	-	-	5e+0	At2g32790	ubiquitin-conjugating enzyme, putative	S.X.	H.G.	Please select
0.39	54.5	Gma.6925.1.S1_at	BE819839	-	-	1e-1	At3g09700	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.38	53.3	GmaAffx.783.1.A1_at	BE822842	-	-	7e-1	At5g11412	nucleic acid binding / nucleotide binding	S.X.	H.G.	Please select
0.36	50.8	Gma.8026.1.S1_at	AW621035	-	-	2e-36	At3g57890	tubulin-specific chaperone C-related	S.X.	H.G.	Please select
0.36	50.8	Gma.3595.1.A1_at	CD395253	-	-	2e+0	At5g24790	unknown protein	S.X.	H.G.	Please select
0.35	48.6	Gma.5718.1.A1_s_at	BQ629764	-	-	4e-3	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	S.X.	H.G.	Please select
0.34	47.2	Gma.8026.1.S1_x_at	AW621035	-	-	2e-36	At3g57890	tubulin-specific chaperone C-related	S.X.	H.G.	Please select
0.34	47.2	Gma.8550.1.S1_at	BM092281	-	-	1e-160	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	99.2	GSM201097	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.8	98.7	GSM292868	45_1470.1L.R285P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM292633	60_1358.1I.R224P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.8	97.9	GSM292271	16_1192.1E.R116P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292332	79_1196.1E.R119P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM294449	18_2512.2K.R125P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM292303	4_1190.1E.R115P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	3e-52	206	GmaAffx.91248.1.S1_s_at	CF806973	-	-	2e-8	At3g11410	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	C.G.	S.X.	Please select
0.26	6e-38	159	GmaAffx.52826.3.S1_at	BF596503	-	-	2e-8	At3g11410	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	C.G.	S.X.	Please select
0.14	2e-16	87	Gma.8058.1.A1_at	BM271479	-	-	9e-5	At3g11410	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	C.G.	S.X.	Please select
0.19	8e-16	85	GmaAffx.50980.1.S1_at	BE823095	-	-	9e-1	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	C.G.	S.X.	Please select
0.19	8e-16	85	GmaAffx.50980.1.S1_x_at	BE823095	-	-	9e-1	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	C.G.	S.X.	Please select
0.19	8e-16	85	GmaAffx.50980.1.S1_s_at	BE823095	-	-	9e-1	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	C.G.	S.X.	Please select
0.02	6e-1	36	HgAffx.22588.1.S1_at	BI396492	-	-	1e+0	At2g41420	proline-rich family protein	C.G.	S.X.	Please select
0.02	6e-1	36	HgAffx.13494.1.S1_at	CB374488	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	6e-1	36	GmaAffx.50807.1.S1_at	AW460088	-	-	2e-18	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	9e-18	91	Arabidopsis thaliana	At3g11410	820314	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	6e-2	38	Hordeum vulgare	Contig18582_at	Contig18582	-	-	2e+0	At5g59220	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	2e-4	48	Oryza sativa	Os05g0457200	9633.m03549	-	Protein phosphatase-2C	2e-7	At1g07430	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	8e-16	85	Populus trichocarpa	Ptp.868.1.S1_s_at	CK089985	hypothetical protein	-	7e-47	At3g11410	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-2	40	Triticum aestivum	TaAffx.96410.1.S1_at	BQ801574	-	-	6e-5	At3g11410	PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)	C.G.	S.X.	Please select
0.08	9e-9	59	Vitis vinifera	1608253_at	BQ800315	hypothetical protein LOC100255251	-	4e-4	At5g59220	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.04	1e-2	40	Zea mays	Zm.18290.1.S1_at	BG319707	hypothetical protein LOC100192073	-	4e+0	At5g25220	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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