Gene omics information

Query gene ID	Gma.2206.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.2	Gma.2206.1.S1_at	BG650498	-	-	5e-12	At5g58490	cinnamoyl-CoA reductase family	S.X.	H.G.	Please select
0.86	93.0	GmaAffx.43121.1.A1_s_at	CD393861	-	-	8e-16	At3g18800	unknown protein	S.X.	H.G.	Please select
0.71	87.8	GmaAffx.16423.1.S1_at	BE021487	-	-	3e-2	At3g06750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.64	83.4	Gma.17131.1.S1_at	BE659008	-	-	6e-5	At1g69840	band 7 family protein	S.X.	H.G.	Please select
0.63	82.9	Gma.685.1.S1_at	AF160197.1	Ni-binding urease accessory protein UreG	-	1e-69	At2g34470	UREG (UREASE ACCESSORY PROTEIN G)	S.X.	H.G.	Please select
0.54	74.8	Gma.17754.1.S1_at	BM271361	-	-	2e+0	At4g28820	zinc finger (HIT type) family protein	S.X.	H.G.	Please select
0.46	65.5	Gma.11260.1.S1_a_at	AI759626	-	-	2e-16	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	S.X.	H.G.	Please select
0.40	57.1	Gma.11260.1.S1_x_at	AI759626	-	-	2e-16	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	S.X.	H.G.	Please select
0.31	42.2	Gma.4612.2.S1_at	BQ297216	-	-	2e-18	At3g22960	PKP-ALPHA	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.63706.1.S1_s_at	BG650539	-	-	8e-1	At1g22750	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
145.2	100.0	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
125.2	100.0	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
123.9	100.0	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
68.6	100.0	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
64.0	99.9	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
62.7	99.9	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
59.2	99.9	GSM201129	Whole Seed at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
54.7	99.9	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
53.6	99.9	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
52.2	99.9	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	7e-89	327	GmaAffx.47239.1.S1_at	BU761619	-	-	4e-12	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.22	2e-58	226	GmaAffx.83755.1.S1_at	CA784776	-	-	3e-14	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.22	2e-58	226	GmaAffx.83755.1.S1_x_at	CA784776	-	-	3e-14	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.05	4e-4	46	Gma.1527.2.S1_at	BE658017	Cultivar Sinpaldal 2 dihydroflavonol reductase	-	2e-1	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.02	2e-2	40	GmaAffx.17832.1.S1_at	BG652873	-	-	2e-4	At2g42280	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	1e-1	38	PsAffx.CL810Contig1_at	PsAffx.CL810Contig1	-	-	3e+0	At4g10457	SCRL1 (SCR-Like 1)	C.G.	S.X.	Please select
0.05	1e-1	38	Gma.1527.1.S1_a_at	BI968185	dihydroflavonol reductase	-	1e-5	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.05	1e-1	38	Gma.1527.1.S1_x_at	BI968185	Cultivar Sinpaldal 2 dihydroflavonol reductase	-	1e-5	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C20000127_at	PsAffx.C20000127	-	-	6e-2	At1g05300	ZIP5	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	5e-12	71	Arabidopsis thaliana	At5g58490	835962	cinnamoyl-CoA reductase family	F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:cellular_component unknown;BOPFMAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	34	Hordeum vulgare	Contig4489_s_at	Contig4489	-	-	3e+0	At2g29525	-	C.G.	S.X.	Please select
0.03	3e-2	40	Oryza sativa	Os01g0243400	AK070651.1	-	Hypothetical protein	1e+0	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	6e-37	155	Populus trichocarpa	PtpAffx.164039.1.S1_at	BP931187	hypothetical protein	-	8e-10	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	TaAffx.8343.1.S1_at	CA626916	-	-	2e+0	At3g15300	VQ motif-containing protein	C.G.	S.X.	Please select
0.19	3e-29	127	Vitis vinifera	1621163_at	BQ799269	hypothetical protein LOC100253488	-	1e-6	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.04	5e-1	34	Zea mays	Zm.2336.1.A1_at	AW355833	-	-	1e+1	At5g46800	BOU (A BOUT DE SOUFFLE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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