Gene omics information

Query gene ID	Gma.2198.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	57.1	Gma.2198.1.S1_at	CA802683	-	-	6e-97	At1g14360	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	S.X.	H.G.	Please select
0.47	66.6	Gma.6427.1.S1_x_at	U20502.1	calnexin	-	8e-94	At5g07340	calnexin, putative	S.X.	H.G.	Please select
0.27	35.7	Gma.6427.3.S1_at	AW760945	calnexin	-	3e-6	At5g07340	calnexin, putative	S.X.	H.G.	Please select
0.15	18.7	Gma.5024.1.S1_at	AW310126	-	-	1e-1	At5g41490	F-box family protein	S.X.	H.G.	Please select
0.13	16.3	GmaAffx.65050.2.S1_at	AW830642	-	-	3e-4	At1g21900	emp24/gp25L/p24 family protein	S.X.	H.G.	Please select
0.11	14.2	GmaAffx.41357.2.S1_at	BE824352	-	-	1e-3	At3g57220	UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.2	99.6	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.5	99.2	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.4	99.1	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.3	98.9	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.8	98.7	GSM191090	Soybean_Cotyledon_OI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.8	98.7	GSM293375	60_1587.1Q.R230L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.6	98.7	GSM170929	Rust Innoculated, biological rep3	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
6.2	98.6	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.1	98.5	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.0	98.5	GSM191081	Soybean_Cotyledon_EN1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	36	PsAffx.C73000065_at	PsAffx.C73000065	-	-	9e-1	At3g02040	SRG3 (senescence-related gene 3)	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.78534.1.S1_at	BQ297217	-	-	8e-14	At5g19540	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.psHB002xO15f_at	PsAffx.psHB002xO15f	-	-	4e-4	At2g34500	CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1)	C.G.	S.X.	Please select
0.02	4e+0	34	PsAffx.C99000036_at	PsAffx.C99000036	-	-	7e-2	At5g19190	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C9000058_at	PsAffx.C9000058	-	-	6e+0	At2g32235	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C314000002_at	PsAffx.C314000002	-	-	6e-1	At1g04500	zinc finger CONSTANS-related	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C22000105_at	PsAffx.C22000105	-	-	2e+0	At4g20390	integral membrane family protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C182000014_at	PsAffx.C182000014	-	-	5e+0	At5g26790	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	34	HgAffx.24173.1.S1_at	CB378292	-	-	1e+0	At2g02740	WHY3 (WHIRLY 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	6e-97	355	Arabidopsis thaliana	At1g14360	837998	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	F:pyrimidine nucleotide sugar transmembrane transporter activity;P:unknown;C:endomembrane system;MOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	4e-7	56	Hordeum vulgare	Contig13096_at	Contig13096	-	-	3e-9	At1g14360	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	C.G.	S.X.	Please select
0.16	7e-9	63	Oryza sativa	Os06g0593100	AK060274.1	-	UDP-galactose/UDP-glucose transporter	5e-8	At2g02810	UTR1 (UDP-GALACTOSE TRANSPORTER 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	2e-113	410	Populus trichocarpa	Ptp.7345.1.S1_s_at	DN485965	hypothetical protein	-	7e-81	At1g14360	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	3e-3	44	Triticum aestivum	TaAffx.128630.1.S1_at	CA621601	-	-	4e+0	At5g59440	ZEU1 (ZEUS1)	C.G.	S.X.	Please select
0.25	9e-38	157	Vitis vinifera	1620565_at	CF203272.1	-	-	3e-26	At1g14360	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	C.G.	S.X.	Please select
0.12	2e-5	50	Zea mays	Zm.17574.1.A1_at	CF628805	hypothetical protein LOC100216965	-	5e-8	At2g02810	UTR1 (UDP-GALACTOSE TRANSPORTER 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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