Gene omics information

Query gene ID	Gma.2150.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	Gma.2150.1.S1_at	CD401414	-	-	3e-21	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	S.X.	H.G.	Please select
0.77	90.3	Gma.6437.1.S1_at	CD391859	-	-	1e-25	At5g52840	NADH-ubiquinone oxidoreductase-related	S.X.	H.G.	Please select
0.67	86.1	Gma.2917.1.S1_at	AW348875	-	-	4e-7	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.72806.1.S1_at	BG651678	-	-	2e+0	At5g47360	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select
0.40	57.1	Gma.16923.1.A1_s_at	AI443575	-	-	5e-5	At2g46505	SDH4	S.X.	H.G.	Please select
0.40	57.1	Gma.8354.1.S1_s_at	BE658968	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	S.X.	H.G.	Please select
0.36	50.8	Gma.6439.1.S1_at	BE659084	-	-	7e-34	At3g53580	diaminopimelate epimerase family protein	S.X.	H.G.	Please select
0.25	32.6	Gma.4111.1.S1_at	BM891443	-	-	6e-82	At3g08580	AAC1 (ADP/ATP CARRIER 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	99.5	GSM191089	Soybean_Cotyledon_OI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
9.0	99.2	GSM201129	Whole Seed at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.4	99.1	GSM191091	Soybean_Cotyledon_SEED1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
8.0	99.0	GSM201110	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.8	99.0	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.7	99.0	GSM182047	Whole Seed at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.6	98.9	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.6	98.9	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.4	98.9	GSM201108	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.4	98.9	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	6e-42	173	Gma.16388.1.S1_at	CD403252	-	-	1e-42	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.02	6e-2	40	Gma.3906.1.S1_at	BU544368	-	-	1e-4	At5g63460	SAP domain-containing protein	C.G.	S.X.	Please select
0.03	2e-1	38	GmaAffx.92745.1.S1_s_at	CF808470	-	-	7e-2	At3g19130	ATRBP47B (RNA-binding protein 47B)	C.G.	S.X.	Please select
0.01	2e-1	38	Gma.5451.1.S1_at	BE822328	-	-	1e-15	At3g19130	ATRBP47B (RNA-binding protein 47B)	C.G.	S.X.	Please select
0.01	9e-1	36	PsAffx.C207000018_at	PsAffx.C207000018	-	-	4e-1	At5g64920	CIP8 (COP1-INTERACTING PROTEIN 8)	C.G.	S.X.	Please select
0.02	9e-1	36	GmaAffx.72367.1.S1_at	BU082623	-	-	9e-7	At3g54810	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.01	9e-1	36	Gma.1411.1.S1_at	CD417799	-	-	8e-13	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	C.G.	S.X.	Please select
0.01	9e-1	36	Gma.1411.1.S1_a_at	CD417799	-	-	8e-13	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C81000006_at	PsAffx.C81000006	-	-	2e-1	At3g10760	myb family transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	3e-21	103	Arabidopsis thaliana	At1g19580	838545	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	3e-26	119	Hordeum vulgare	Contig4878_at	Contig4878	-	-	8e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.37	4e-47	190	Oryza sativa	Os01g0283100	AK071713.1	-	Ferripyochelin-binding protein-like	1e-35	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	9e-78	291	Populus trichocarpa	Ptp.2146.1.S1_at	CK088192	hypothetical protein	-	5e-109	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	3e-34	147	Triticum aestivum	Ta.3097.1.S1_at	CD937885	-	-	2e-7	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.23	4e-55	214	Vitis vinifera	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.22	3e-50	198	Zea mays	Zm.15626.1.S1_at	CA404507	-	-	1e-8	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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