Gene omics information

Query gene ID	Gma.2135.1.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.8	Gma.2135.1.S1_a_at	BE660424	-	-	7e-1	At3g26400	EIF4B1	S.X.	H.G.	Please select
0.91	98.6	Gma.1324.1.S1_at	BE658235	-	-	1e-131	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	S.X.	H.G.	Please select
0.80	91.5	Gma.7774.1.S1_at	CD401719	-	-	1e-26	At3g10540	3-phosphoinositide-dependent protein kinase, putative	S.X.	H.G.	Please select
0.80	91.5	Gma.15367.1.S1_at	CD412241	-	-	7e-60	At3g59910	-	S.X.	H.G.	Please select
0.73	88.9	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	S.X.	H.G.	Please select
0.33	46.1	Gma.7046.1.S1_at	AI960403	-	-	4e-54	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
196.0	100.0	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
192.2	100.0	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
138.1	100.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
6.1	98.5	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.7	98.4	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.6	98.3	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.4	98.2	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.3	97.5	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.2	97.4	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.1	97.3	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	GmaAffx.72584.1.S1_at	BG157539	cyclin-dependent kinase inhibitor 2;1	-	6e-5	At3g50630	KRP2 (KIP-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.01	1e+0	36	PsAffx.C31000056_at	PsAffx.C31000056	-	-	2e-1	At2g20450	60S ribosomal protein L14 (RPL14A)	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C91000038_at	PsAffx.C91000038	-	-	3e-1	At5g55430	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C296000004_at	PsAffx.C296000004	-	-	2e-1	At5g28800	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	34	HgAffx.4734.1.S1_at	CD748690	-	-	1e+1	At5g24355	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	34	GmaAffx.69794.1.S1_at	BU091011	-	-	1e-11	At1g43690	ubiquitin interaction motif-containing protein	C.G.	S.X.	Please select
0.02	4e+0	34	Gma.5998.1.A1_at	BI968591	-	-	1e-48	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	C.G.	S.X.	Please select
0.01	4e+0	34	Gma.13125.1.S1_at	CD409903	-	-	8e-68	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	C.G.	S.X.	Please select
0.01	1e+1	32	PsAffx.C59000064_at	PsAffx.C59000064	-	-	1e-1	At1g63610	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	7e-1	36	Arabidopsis thaliana	At3g26400	822244	EIF4B1	member of eIF4B - eukaryotic initiation factor 4B	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-2	40	Hordeum vulgare	Contig20714_at	Contig20714	-	-	1e+0	At1g17010	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.03	1e-3	46	Oryza sativa	Os02g0595800	9630.m03669	-	Eukaryotic translation initiation factor 4B	7e-1	At1g59865	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-7	57	Populus trichocarpa	PtpAffx.208664.1.S1_s_at	pmrna17187	hypothetical protein	-	2e-11	At3g26400	EIF4B1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e-2	40	Triticum aestivum	Ta.3588.1.S1_at	BJ213313	-	-	6e-2	At1g26796	-	C.G.	S.X.	Please select
0.03	8e-1	34	Vitis vinifera	1617083_at	CB912270	-	-	3e+0	At5g62575	unknown protein	C.G.	S.X.	Please select
0.04	7e-2	38	Zea mays	Zm.10348.1.S1_at	CA404056	-	-	2e+0	At4g13615	four F5 protein-related / 4F5 protein-related	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage