CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.2074.2.A1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 71.7 Gma.2074.2.A1_at AW350766 - - 3e+0 At5g15581 unknown protein S.X. H.G.
0.44 63.3 Gma.8774.1.A1_at BU545200 - - 1e-3 At3g21580 cobalt ion transmembrane transporter S.X. H.G.
0.04 7.0 GmaAffx.7191.1.S1_at BE658752 - - 4e-10 At2g33630 3-beta hydroxysteroid dehydrogenase/isomerase family protein S.X. H.G.
0.04 7.0 GmaAffx.19817.1.A1_at BU549061 - - 8e-2 At2g41590 unknown protein S.X. H.G.
0.03 5.8 GmaAffx.1729.1.A1_at BI426505 - - 1e-3 At2g17380 AP19 S.X. H.G.
0.02 4.5 Gma.11458.1.S1_at AW568851 - - 1e+0 At2g06025 GCN5-related N-acetyltransferase (GNAT) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.7 99.1 GSM182039 Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
8.4 99.1 GSM201125 Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
7.8 99.0 GSM238051 Soybean-Mandarin-7-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.5 98.9 GSM238047 Soybean-Mandarin-1-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.2 98.9 GSM147946 Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2 GSE6414 Expression data from soybean seed compartments with embryos at the globular stage
7.1 98.8 GSM238050 Soybean-Mandarin-6-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.8 98.7 GSM238048 Soybean-Mandarin-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.5 98.7 GSM238049 Soybean-Mandarin-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.5 98.7 GSM238059 Soybean-S03W4-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.3 98.6 GSM238030 Soybean-2601R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-6 52 Gma.2074.1.S1_at BQ297668 - - 5e-7 At2g39170 unknown protein C.G. S.X.
0.09 2e-2 40 GmaAffx.52732.1.A1_at BU544854 - - 4e+0 At5g67411 - C.G. S.X.
0.01 1e+0 34 PsAffx.C146000020_at PsAffx.C146000020 - - 1e-2 At4g39870 - C.G. S.X.
0.03 1e+0 34 GmaAffx.67789.1.S1_at BE058644 - - 2e-43 At3g26670 - C.G. S.X.
0.04 1e+0 34 GmaAffx.67751.1.S1_at BF595941 - - 1e-2 At4g39070 zinc finger (B-box type) family protein C.G. S.X.
0.04 1e+0 34 GmaAffx.46756.1.S1_at BQ297035 - - 3e-3 At3g15030 TCP4 (TCP family transcription factor 4) C.G. S.X.
0.03 1e+0 34 Gma.7511.1.A1_at AW309173 - - 2e-30 At5g44110 POP1 C.G. S.X.
0.03 1e+0 34 Gma.6890.1.A1_at BU550718 - - 1e-1 At2g31710 unknown protein C.G. S.X.
0.03 1e+0 34 Gma.6890.1.A1_s_at BU550718 - - 1e-1 At2g31710 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At5g15581 6241099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 4e-1 34 Hordeum vulgare Contig23458_at Contig23458 - - 5e+0 At5g48950 thioesterase family protein C.G. S.X.
0.04 6e+0 32 Oryza sativa Os06g0645000 9634.m04226 - - 9e+0 At3g04990 - C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.86522.1.S1_at BU882907 - - 4e+0 At4g38370 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.80209.1.S1_at CA699869 Catalase - 1e+1 At3g11640 unknown protein C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1617223_at CF403517 - - 2e+1 At5g35470 unknown protein C.G. S.X.
0.04 6e+0 30 Zea mays ZmAffx.175.1.A1_at AI668276 - - 3e+0 At3g06820 mov34 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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