Gene omics information

Query gene ID	Gma.2015.2.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	90.8	Gma.2015.2.S1_a_at	BU765143	-	-	2e-3	At1g62820	calmodulin, putative	S.X.	H.G.	Please select
0.69	86.8	GmaAffx.77088.2.S1_s_at	BU090015	-	-	2e-1	At2g44650	CHL-CPN10 (CHLOROPLAST CHAPERONIN 10)	S.X.	H.G.	Please select
0.67	86.1	Gma.6445.1.S1_at	BE210393	-	-	2e-30	At4g03120	proline-rich family protein	S.X.	H.G.	Please select
0.62	82.1	GmaAffx.23184.1.S1_at	BE021868	-	-	1e-66	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.34172.1.S1_s_at	BF070551	-	-	5e-18	At1g09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	S.X.	H.G.	Please select
0.57	78.8	Gma.5810.2.S1_a_at	AI965339	-	-	2e-79	At3g26340	20S proteasome beta subunit E, putative	S.X.	H.G.	Please select
0.55	76.3	Gma.2892.1.S1_at	CD398484	-	-	3e-36	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.91235.1.S1_s_at	CF806960	-	-	8e-45	At4g31300	PBA1	S.X.	H.G.	Please select
0.54	74.8	Gma.15124.1.S1_at	BU548348	-	-	1e-41	At1g27310	NTF2A (NUCLEAR TRANSPORT FACTOR 2A)	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.79097.1.S1_at	BE331146	-	-	3e-1	At3g44760	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	99.5	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.1	97.3	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.6	96.7	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.6	96.7	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.5	96.6	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.4	96.4	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.4	96.4	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.4	96.4	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	9e-3	42	PsAffx.CL97Contig1_at	PsAffx.CL97Contig1	-	-	3e-35	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.03	4e-2	40	HgAffx.12350.1.S1_at	CB375632	-	-	9e-1	At1g61353	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	38	GmaAffx.46969.1.S1_at	BE806934	-	-	6e-22	At4g33950	OST1 (OPEN STOMATA 1)	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C60000016_at	PsAffx.C60000016	-	-	6e+0	At5g47870	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C50000062_at	PsAffx.C50000062	-	-	1e+0	At3g10300	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C130000002_at	PsAffx.C130000002	-	-	2e-1	At3g63210	MARD1	C.G.	S.X.	Please select
0.03	6e-1	36	HgAffx.5588.1.S1_at	CD747836	-	-	8e+0	At5g53895	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL58Contig1_s_at	PsAffx.CL58Contig1	-	-	6e+0	At5g47930	40S ribosomal protein S27 (RPS27D)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.CL4Contig9_at	PsAffx.CL4Contig9	-	-	2e-8	At1g08360	60S ribosomal protein L10A (RPL10aA)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	2e-3	44	Arabidopsis thaliana	At1g62820	842581	calmodulin, putative	F:calcium ion binding;P:response to cold;C:nucleus;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	1e-24	113	Hordeum vulgare	Contig6831_s_at	Contig6831	-	-	2e-3	At1g12310	calmodulin, putative	C.G.	S.X.	Please select
0.33	1e-39	165	Oryza sativa	Os08g0117400	AK059891.1	-	Calmodulin 1 (Fragment)	2e-9	At1g12310	calmodulin, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	6e-7	56	Populus trichocarpa	Ptp.610.1.S1_at	CV227460	hypothetical protein	-	1e-22	At1g12310	calmodulin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	9e-24	111	Triticum aestivum	Ta.14173.1.S1_a_at	CA649522	-	-	3e-2	At1g12310	calmodulin, putative	C.G.	S.X.	Please select
0.44	5e-81	299	Vitis vinifera	1607704_at	AF488697.1	serine/threonine kinase-like	-	2e-18	At1g12310	calmodulin, putative	C.G.	S.X.	Please select
0.34	4e-42	171	Zea mays	Zm.16265.1.S1_at	CA402929	calmodulin	-	2e+0	At3g50250	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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