Gene omics information

Query gene ID	Gma.1913.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	S.X.	H.G.	Please select
0.83	92.5	Gma.1324.1.S1_at	BE658235	-	-	1e-131	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	S.X.	H.G.	Please select
0.80	91.5	Gma.7774.1.S1_at	CD401719	-	-	1e-26	At3g10540	3-phosphoinositide-dependent protein kinase, putative	S.X.	H.G.	Please select
0.80	91.5	Gma.15367.1.S1_at	CD412241	-	-	7e-60	At3g59910	-	S.X.	H.G.	Please select
0.67	86.1	Gma.2135.1.S1_a_at	BE660424	-	-	7e-1	At3g26400	EIF4B1	S.X.	H.G.	Please select
0.59	79.5	Gma.10004.1.S1_at	BF070937	-	-	6e-25	At5g36290	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
190.7	100.0	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
164.1	100.0	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
133.6	100.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.9	97.1	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.7	96.8	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM201101	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM201112	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.3	96.2	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.2	96.0	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.2	96.0	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	0	737	Gma.1277.2.S1_at	AW666288	-	-	1e-118	At5g59370	ACT4 (ACTIN 4)	C.G.	S.X.	Please select
0.56	0	656	Gma.6406.1.S1_at	CD394756	-	-	0	At2g37620	ACT1 (ACTIN 1)	C.G.	S.X.	Please select
0.55	0	638	Gma.16111.3.S1_a_at	CA802301	-	-	2e-148	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.55	0	638	Gma.16111.3.S1_at	CA802301	-	-	2e-148	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.44	2e-122	440	Gma.16111.2.A1_at	BU550402	-	-	9e-104	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.33	3e-103	377	GmaAffx.89997.1.S1_at	CF805722	-	-	1e-77	At3g53750	ACT3 (actin 3)	C.G.	S.X.	Please select
0.27	2e-98	361	Gma.16989.1.A1_at	CD413608	-	-	1e-37	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.29	3e-66	254	Gma.10738.1.S1_at	BG653978	-	-	5e-121	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.28	9e-57	222	Gma.10738.2.S1_s_at	BQ629434	-	-	6e-121	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	724	Arabidopsis thaliana	At2g37620	818339	ACT1 (ACTIN 1)	Member of the actin gene family. Expressed in mature pollen.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.58	8e-163	573	Hordeum vulgare	Contig1391_at	Contig1391	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.59	0	741	Oryza sativa	Os03g0718100	AB047313.1	-	Actin 1	0	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.52	1e-173	611	Populus trichocarpa	PtpAffx.1258.4.S1_s_at	CF232778	actin 1 /// actin 9	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	8e-146	517	Triticum aestivum	Ta.1098.1.S1_at	BJ229397	-	-	1e-169	At3g12110	ACT11 (actin-11)	C.G.	S.X.	Please select
0.49	0	728	Vitis vinifera	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select
0.56	0	636	Zea mays	Zm.16513.9.A1_a_at	CD444572	-	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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