Gene omics information

Query gene ID	Gma.1808.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	93.5	Gma.1808.1.S1_at	AW309911	-	-	4e-54	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	S.X.	H.G.	Please select
0.39	54.5	Gma.7341.1.A1_s_at	CA953350	-	-	3e-29	At2g22670	IAA8	S.X.	H.G.	Please select
0.22	28.1	GmaAffx.41905.1.S1_at	AW351001	-	-	2e+0	At4g16410	unknown protein	S.X.	H.G.	Please select
0.21	26.6	Gma.4597.1.S1_at	AW099840	-	-	6e-11	At4g21760	BGLU47 (Beta-glucosidase 47)	S.X.	H.G.	Please select
0.20	25.1	Gma.5389.1.S1_at	BI968545	-	-	2e-4	At1g72160	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select
0.19	23.7	Gma.13221.1.A1_at	BE819862	-	-	6e+0	At5g52140	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.18	22.3	Gma.6789.1.S1_at	BU544065	-	-	4e-7	At1g68920	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.17	21.2	Gma.13220.1.A1_at	CD396437	-	-	1e-12	At5g23550	-	S.X.	H.G.	Please select
0.16	19.7	GmaAffx.88740.1.S1_s_at	CK605984	-	-	2e-9	At1g26355	SP1L1 (SPIRAL1-LIKE1)	S.X.	H.G.	Please select
0.15	18.7	GmaAffx.85865.1.S1_at	AW396826	-	-	2e-16	At3g27580	ATPK7	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.1	99.7	GSM191090	Soybean_Cotyledon_OI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
17.8	99.7	GSM182045	Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
17.6	99.7	GSM201114	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
15.3	99.6	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
13.9	99.6	GSM191089	Soybean_Cotyledon_OI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
13.7	99.5	GSM182046	Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
13.2	99.5	GSM201126	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
11.0	99.4	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
10.9	99.4	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
10.7	99.4	GSM201127	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	1e-11	71	Gma.10649.2.S1_at	BI786549	-	-	3e-35	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	C.G.	S.X.	Please select
0.08	2e-10	67	Gma.3083.1.S1_at	BE474466	-	-	3e-65	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	C.G.	S.X.	Please select
0.11	5e-8	59	GmaAffx.86597.1.S1_at	BI316111	-	-	1e-21	At5g63710	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.20	5e-8	59	GmaAffx.24064.1.S1_at	CD398750	-	-	9e-34	At3g25560	NIK2 (NSP-INTERACTING KINASE 2)	C.G.	S.X.	Please select
0.03	3e-3	44	GmaAffx.70927.1.S1_at	AW156231	-	-	3e-5	At1g25390	protein kinase family protein	C.G.	S.X.	Please select
0.04	3e-3	44	GmaAffx.31234.1.A1_at	BE823971	-	-	8e-10	At5g45780	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.03	2e-1	38	GmaAffx.76914.1.S1_at	BQ452751	-	-	1e-15	At5g16000	NIK1 (NSP-INTERACTING KINASE 1)	C.G.	S.X.	Please select
0.04	8e-1	36	GmaAffx.75380.1.S1_at	AI988078	-	-	4e-6	At1g17230	ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.02	8e-1	36	GmaAffx.68762.1.A1_at	BE822821	-	-	3e-6	At4g32930	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	4e-54	212	Arabidopsis thaliana	At1g60800	842374	NIK3 (NSP-INTERACTING KINASE 3)	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	1e-9	63	Hordeum vulgare	Contig5422_at	Contig5422	-	-	1e-39	At1g71830	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	C.G.	S.X.	Please select
0.16	9e-23	109	Oryza sativa	Os01g0171000	AK100017.1	-	BRASSINOSTEROID INSENSITIVE 1-associated receptorkinase 1 precursor (EC 2.7.1.37) (BRI1-associatedreceptor kinase 1) (Somatic embryogenesis receptor-likekinase 3)	6e-21	At3g25560	NIK2 (NSP-INTERACTING KINASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.49	3e-65	250	Populus trichocarpa	Ptp.4176.1.S1_at	CV242766	hypothetical protein	-	2e-19	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	4e-17	89	Triticum aestivum	TaAffx.18441.1.A1_at	CA609828	-	-	1e-12	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	C.G.	S.X.	Please select
0.23	1e-29	129	Vitis vinifera	1606662_at	CB979542	similar to somatic embryogenesis receptor kinase	-	6e-59	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	C.G.	S.X.	Please select
0.07	1e-9	63	Zea mays	Zm.10062.1.A1_at	BM378648	hypothetical protein LOC100280233	-	4e-4	At5g16000	NIK1 (NSP-INTERACTING KINASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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