Gene omics information

Query gene ID	Gma.18000.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.33	46.1	Gma.18000.1.S1_at	BG406413	-	-	6e-12	At1g19230	respiratory burst oxidase protein E (RbohE) / NADPH oxidase	S.X.	H.G.	Please select
0.67	86.1	Gma.1137.2.S1_x_at	CA852403	-	-	2e-16	At5g48930	HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)	S.X.	H.G.	Please select
0.67	86.1	Gma.1137.1.S1_x_at	BF067710	-	-	3e-9	At5g48930	HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)	S.X.	H.G.	Please select
0.60	80.7	Gma.1137.1.S1_a_at	BF067710	-	-	3e-9	At5g48930	HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)	S.X.	H.G.	Please select
0.57	78.8	Gma.5578.3.S1_at	AW310572	Cytochrome P450 monooxygenase CYP98A2p (CYP98A2)	-	2e-1	At5g22530	unknown protein	S.X.	H.G.	Please select
0.53	74.2	Gma.4928.1.S1_a_at	AF002259.1	4-coumarate:CoA ligase isoenzyme 2	-	4e-9	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	S.X.	H.G.	Please select
0.53	74.2	Gma.5578.1.S1_x_at	BE659192	cytochrome P450 98A2	-	7e-20	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.9	99.6	GSM170928	V2 Control, biological rep3	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
9.1	99.2	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
9.0	99.2	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.6	98.7	GSM293151	62_C049.1O.SLO3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM294320	6_3151.2I.SLI2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM293708	44_3049.2C.SLC3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM294669	40_3227.2M.SLM2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.5	98.3	GSM293595	26_2077.2B.R246U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM294257	17_3149.2I.SLI1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	4e-51	202	Gma.18056.1.S1_at	BU544487	-	-	1e+0	At5g37070	unknown protein	C.G.	S.X.	Please select
0.08	2e-6	54	Gma.18084.1.S1_at	BI317557	-	-	2e-2	At1g09090	ATRBOHB (respiratory burst oxidase homolog B)	C.G.	S.X.	Please select
0.06	5e-4	46	Gma.2688.3.S1_a_at	BE555952	-	-	7e-8	At5g07390	ATRBOHA (respiratory burst oxidase homolog A)	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C78000010_at	PsAffx.C78000010	-	-	3e+0	At5g61230	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C8000098_at	PsAffx.C8000098	-	-	4e+0	At1g35181	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.6385.1.S1_at	BI971993	-	-	6e+0	At4g39190	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	32	PsAffx.psHB044xM02f_at	PsAffx.psHB044xM02f	-	-	1e+0	At5g25770	unknown protein	C.G.	S.X.	Please select
0.01	8e+0	32	PsAffx.C86000004_s_at	PsAffx.C86000004	-	-	3e-3	At2g27820	PD1 (PREPHENATE DEHYDRATASE 1)	C.G.	S.X.	Please select
0.01	8e+0	32	PsAffx.C38000012_at	PsAffx.C38000012	-	-	4e+0	At5g41330	potassium channel tetramerisation domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	6e-12	71	Arabidopsis thaliana	At1g19230	838506	respiratory burst oxidase protein E (RbohE) / NADPH oxidase	F:in 7 functions;P:defense response;C:integral to membrane, membrane;MFPBOA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-4	46	Hordeum vulgare	Contig12420_at	Contig12420	-	-	8e-25	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please select
0.07	8e-10	65	Oryza sativa	Os.15679.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	4e-26	119	Populus trichocarpa	PtpAffx.203269.1.S1_at	pmrna6479	-	-	2e-73	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	6e-3	42	Triticum aestivum	Ta.16705.1.S1_at	CD878857	-	-	3e-7	At1g19230	respiratory burst oxidase protein E (RbohE) / NADPH oxidase	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1622460_at	CD010264	-	-	9e-5	At3g25550	F-box family protein	C.G.	S.X.	Please select
0.06	4e-5	48	Zea mays	Zm.4309.1.S1_at	AW052961	respiratory burst oxidase protein B	-	1e-25	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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