Gene omics information

Query gene ID	Gma.17993.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	91.5	Gma.17993.1.S1_at	BQ628525	-	-	2e+0	At4g38660	thaumatin, putative	S.X.	H.G.	Please select
0.63	82.9	GmaAffx.3364.1.A1_at	BE347229	-	-	8e-2	At4g15100	scpl30 (serine carboxypeptidase-like 30)	S.X.	H.G.	Please select
0.53	74.2	Gma.4438.3.S1_x_at	BU764535	-	-	8e-1	At5g50050	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.53	74.2	Gma.4438.4.S1_x_at	BE021855	-	-	2e-1	At5g63085	-	S.X.	H.G.	Please select
0.53	74.2	Gma.4438.2.S1_at	BQ630502	-	-	5e+0	At5g33330	RNase H domain-containing protein	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.84058.1.A1_s_at	CD396207	-	-	7e-4	At5g24530	DMR6 (DOWNY MILDEW RESISTANT 6)	S.X.	H.G.	Please select
0.48	67.7	GmaAffx.82048.1.S1_at	BI320672	-	-	1e-2	At4g13195	CLE44 (CLAVATA3/ESR-RELATED 44)	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.93356.1.S1_at	CF807350	-	-	2e+0	At5g47870	unknown protein	S.X.	H.G.	Please select
0.18	22.3	GmaAffx.57065.1.S1_at	AI938354	-	-	7e-1	At4g01680	MYB55 (myb domain protein 55)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.7	99.9	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
28.0	99.8	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
26.8	99.8	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
26.1	99.8	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
24.4	99.8	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
17.6	99.7	GSM293524	40_2027.2A.R196L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.8	99.7	GSM293498	17_2003.2A.R270U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.3	99.6	GSM293527	43_2015.2A.R250L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.6	99.6	GSM293543	58_2017.2A.R245L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.7	99.5	GSM293592	23_2091.2B.R298L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	1576	Gma.17993.1.S1_s_at	BQ628525	-	-	2e+0	At4g38660	thaumatin, putative	C.G.	S.X.	Please select
0.80	0	940	GmaAffx.91091.1.A1_at	CF806816	-	-	2e-3	At1g75050	-	C.G.	S.X.	Please select
0.80	0	940	GmaAffx.91091.1.S1_at	CF808795	-	-	2e-3	At1g75050	-	C.G.	S.X.	Please select
0.57	7e-127	454	Gma.2033.1.S1_s_at	BI320403	-	-	9e-4	At1g75050	-	C.G.	S.X.	Please select
0.11	6e-7	56	GmaAffx.92230.1.A1_s_at	CF807955	PR-5b protein	-	9e-2	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select
0.11	6e-7	56	GmaAffx.92230.1.A1_at	CF807955	PR-5b protein	-	9e-2	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select
0.09	6e-7	56	GmaAffx.92230.1.S1_at	CF807302	-	-	9e-2	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select
0.04	2e-6	54	Gma.2821.1.S1_at	AI461152	GmOLPa mRNA for PR-5 protein	-	5e-1	At4g24180	-	C.G.	S.X.	Please select
0.11	4e-5	50	Gma.2821.2.S1_a_at	BI469945	PR-5 protein	-	2e-2	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e+0	34	Arabidopsis thaliana	At4g38660	830022	thaumatin, putative	F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	3e-6	52	Hordeum vulgare	AF016328_at	AF016328	-	-	7e-2	At1g75050	-	C.G.	S.X.	Please select
0.05	6e-11	69	Oryza sativa	Os03g0663500	U77656.1	-	Thaumatin, pathogenesis-related family protein	7e+0	At3g25400	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	7e-19	95	Populus trichocarpa	PtpAffx.2271.1.S1_s_at	CA933996	hypothetical protein	-	1e-4	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	4e-7	56	Triticum aestivum	TaAffx.108908.1.S1_x_at	CA684616	-	-	1e+0	At2g36450	HRD (HARDY)	C.G.	S.X.	Please select
0.38	3e-24	111	Vitis vinifera	1606794_at	CB972023	hypothetical protein LOC100259841 /// hypothetical protein LOC100254732 /// hypothetical protein LOC100244461 /// hypothetical protein LOC100249610	-	7e+0	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select
0.12	3e-9	61	Zea mays	Zm.16226.1.A1_at	BM348522	Hypothetical LOC542299	-	4e-1	At2g20180	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage