Gene omics information

Query gene ID	Gma.17925.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	67.7	Gma.17925.1.S1_at	BM270546	-	-	2e-2	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.44856.1.A1_at	BE824220	-	-	7e-1	At2g41170	F-box family protein	S.X.	H.G.	Please select
0.35	48.6	Gma.2326.1.S1_at	CD402840	-	-	4e-20	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	S.X.	H.G.	Please select
0.33	46.1	GmaAffx.3847.1.A1_s_at	BE823774	transcription factor bZIP38	-	1e+1	At5g26692	-	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.12075.1.S1_at	CA802446	-	-	1e-5	At1g06210	VHS domain-containing protein / GAT domain-containing protein	S.X.	H.G.	Please select
0.27	35.7	Gma.10015.1.S1_at	BI469759	-	-	4e+0	At4g30460	glycine-rich protein	S.X.	H.G.	Please select
0.26	33.9	GmaAffx.87226.1.S1_at	BI423956	-	-	5e-4	At5g04560	DME (DEMETER)	S.X.	H.G.	Please select
0.20	25.1	Gma.2298.1.S1_at	BU545441	-	-	3e-4	At1g49400	emb1129 (embryo defective 1129)	S.X.	H.G.	Please select
0.15	18.7	GmaAffx.56989.1.S1_at	BE657180	-	-	2e+0	At4g34135	UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2)	S.X.	H.G.	Please select
0.15	18.7	Gma.3906.1.S1_at	BU544368	-	-	1e-4	At5g63460	SAP domain-containing protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
59.4	99.9	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
41.1	99.9	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
26.7	99.8	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
24.2	99.8	GSM191077	Soybean_Cotyledon_SUS1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
21.5	99.8	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
20.3	99.7	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
17.4	99.7	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
16.7	99.7	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
16.1	99.6	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
14.9	99.6	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.70	2e-163	575	Gma.7298.1.S1_s_at	BG156412	-	-	1e-7	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.07	8e-6	52	GmaAffx.57432.1.S1_at	BE657443	-	-	1e+1	At5g51812	unknown protein	C.G.	S.X.	Please select
0.08	1e-1	38	GmaAffx.64794.1.S1_at	CA801749	-	-	4e-6	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C30000087_s_at	PsAffx.C30000087	-	-	5e+0	At5g07430	pectinesterase family protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.62050.1.S1_at	AW307325	-	-	2e-1	At5g18890	inosine-uridine preferring nucleoside hydrolase family protein	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.16910.1.S1_at	BU549219	-	-	3e-1	At1g12440	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.13036.1.S1_at	CD393069	inducer of CBF expression 1 /// inducer of CBF expression 4	-	1e-23	At3g26744	ICE1 (INDUCER OF CBF EXPRESSION 1)	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.12803.1.A1_at	BE473607	-	-	1e+0	At5g22940	F8H (FRA8 HOMOLOG)	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.CL206Contig1_at	PsAffx.CL206Contig1	-	-	4e-5	At5g05470	EIF2 ALPHA	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-2	40	Arabidopsis thaliana	At3g29575	822619	AFP3 (ABI FIVE BINDING PROTEIN 3)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	32	Hordeum vulgare	HVSMEc0019O14f_at	HVSMEc0019O14f	-	-	5e+0	At5g07960	unknown protein	C.G.	S.X.	Please select
0.08	2e-1	38	Oryza sativa	Os07g0602900	9635.m04117	-	Conserved hypothetical protein	5e-1	At1g54830	NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	4e-17	89	Populus trichocarpa	PtpAffx.50616.1.A1_at	CV239482	hypothetical protein	-	1e-10	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.38212.1.S1_at	BJ244700	-	-	1e-6	At1g80660	AHA9	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1617667_at	CF213861	-	-	1e+0	At4g18510	CLE2 (CLAVATA3/ESR-RELATED)	C.G.	S.X.	Please select
0.06	1e-5	50	Zea mays	Zm.17814.1.S1_at	CD446349	UPF0737 protein 1	-	6e-1	At5g14110	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage