CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.17638.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.76 89.7 Gma.17638.1.S1_at BG510363 - - 3e-9 At5g57180 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) S.X. H.G.
0.66 84.0 Gma.16328.1.S1_at CD412189 - - 1e-1 At2g27770 unknown protein S.X. H.G.
0.62 82.1 Gma.13439.1.A1_at CD397985 - - 2e-4 At2g43560 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein S.X. H.G.
0.59 79.5 Gma.18021.1.S1_at CD402537 - - 3e-24 At4g01310 ribosomal protein L5 family protein S.X. H.G.
0.52 73.1 GmaAffx.74515.1.S1_at BU546685 - - 4e-39 At1g04420 aldo/keto reductase family protein S.X. H.G.
0.51 72.3 GmaAffx.92825.1.S1_s_at CF808550 - - 4e-1 At3g28680 prolylcarboxypeptidase-related S.X. H.G.
0.49 68.3 Gma.13644.2.A1_s_at CD402597 - - 3e+0 At5g36680 unknown protein S.X. H.G.
0.49 68.3 Gma.13757.1.A1_at CD404632 - - 3e+0 At2g16060 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) S.X. H.G.
0.47 66.6 Gma.16937.1.S1_at BI944977 - - 2e-5 At2g38140 PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4) S.X. H.G.
0.43 60.6 GmaAffx.43441.1.S1_at BE821323 - - 9e-1 At1g54310 RNA binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
261.7 100.0 GSM184827 Young trifoliate leaf, biological replicate 2 GSE6414 Expression data from soybean seed compartments with embryos at the globular stage
204.1 100.0 GSM184826 Young trifoliate leaf, biological replicate 1 GSE6414 Expression data from soybean seed compartments with embryos at the globular stage
119.5 100.0 GSM209589 resistant_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
92.3 100.0 GSM238030 Soybean-2601R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
77.9 100.0 GSM209580 resistant_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
77.1 100.0 GSM209587 resistant_24hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
71.0 100.0 GSM209599 susceptible_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
68.6 100.0 GSM209590 susceptible_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
60.2 99.9 GSM238032 Soybean-2601R-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
57.0 99.9 GSM209581 susceptible_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-87 323 Gma.17638.2.S1_at BI786260 - - 1e-6 At4g25990 CIL C.G. S.X.
0.15 4e-55 216 GmaAffx.19759.1.S1_at BG154978 - - 3e-1 At4g22105 SCRL26 (SCR-Like 26) C.G. S.X.
0.02 2e-1 38 PsAffx.C5000027_at PsAffx.C5000027 - - 2e+0 At2g03230 - C.G. S.X.
0.02 9e-1 36 PsAffx.CL2053Contig1_at PsAffx.CL2053Contig1 - - 5e+0 At5g06270 unknown protein C.G. S.X.
0.01 9e-1 36 PsAffx.C8000085_at PsAffx.C8000085 - - 1e+1 At5g07110 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) C.G. S.X.
0.01 9e-1 36 PsAffx.C77000070_at PsAffx.C77000070 - - 8e-2 At5g56620 anac099 (Arabidopsis NAC domain containing protein 99) C.G. S.X.
0.01 9e-1 36 PsAffx.C547000002_at PsAffx.C547000002 - - 2e+0 At1g69800 CBS domain-containing protein C.G. S.X.
0.01 9e-1 36 PsAffx.C547000002_s_at PsAffx.C547000002 - - 2e+0 At1g69800 CBS domain-containing protein C.G. S.X.
0.01 9e-1 36 PsAffx.C1006000002_at PsAffx.C1006000002 - - 6e-1 At5g55430 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-9 63 Arabidopsis thaliana At5g57180 835824 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. - - - C.G. S.X.
0.04 2e-5 50 Hordeum vulgare Contig11985_at Contig11985 - - 3e-2 At5g18310 unknown protein C.G. S.X.
0.07 3e-10 67 Oryza sativa Os02g0148000 AK120401.1 - Zinc finger protein 1e+0 At4g27810 unknown protein C.G. S.X.
0.09 2e-29 131 Populus trichocarpa PtpAffx.206187.1.S1_at pmrna12284 hypothetical protein - 6e-8 At5g57180 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) C.G. S.X.
0.05 2e-4 48 Triticum aestivum Ta.15513.1.S1_at CA485206 - - 3e+0 At4g31700 RPS6 (RIBOSOMAL PROTEIN S6) C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1617806_at BQ797048 hypothetical protein LOC100249540 - 4e-10 At2g39990 EIF2 C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.1077.1.A1_at AI948123 hypothetical protein LOC100274739 - 9e+0 At5g23290 PDF5 (PREFOLDIN 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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