Gene omics information

Query gene ID	Gma.17558.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.9	Gma.17558.1.S1_at	BG508180	-	-	8e-4	At5g61660	glycine-rich protein	S.X.	H.G.	Please select
0.64	83.4	GmaAffx.37372.1.S1_at	BM886777	-	-	2e-1	At1g26300	BSD domain-containing protein	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.34908.1.S1_at	AW706106	-	-	6e-6	At1g79520	cation efflux family protein	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.65809.1.S1_at	AW348511	-	-	2e-5	At3g05640	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.39	54.5	GmaAffx.75245.1.S1_at	AI737035	-	-	2e-11	At5g27930	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.31	42.2	Gma.5330.1.S1_at	AW705639	-	-	3e-5	At1g62280	SLAH1 (SLAC1 HOMOLOGUE 1)	S.X.	H.G.	Please select
0.30	40.4	GmaAffx.66041.1.A1_at	BI784930	-	-	8e-2	At1g62400	HT1 (high leaf temperature 1)	S.X.	H.G.	Please select
0.30	40.4	GmaAffx.15709.1.S1_at	CB063343	-	-	8e-4	At3g55580	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.26	33.9	GmaAffx.90252.1.S1_s_at	CF805977	-	-	8e-2	At3g27200	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.25	32.6	Gma.13408.1.S1_at	BI699402	-	-	2e-1	At5g20460	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.2	99.7	GSM293639	66_2084.2B.R288P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.2	99.6	GSM292709	56_1396.1J.R246P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.9	99.6	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.3	99.5	GSM292421	24_1264.1G.R167P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.0	99.4	GSM293018	23_1094.1N.R057P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.8	99.4	GSM294403	60_2462.2J.R176P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.5	99.2	GSM292450	50_1278.1G.R176P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.5	99.2	GSM293814	56_2188.2D.R169P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.9	99.2	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
8.9	99.2	GSM292356	25_1234.1F.R143P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-3	42	PsAffx.C102000041_at	PsAffx.C102000041	-	-	2e+0	At3g54430	SRS6 (SHI-RELATED SEQUENCE 6)	C.G.	S.X.	Please select
0.01	4e-3	42	PsAffx.C102000043_at	PsAffx.C102000043	-	-	3e+0	At1g19350	BES1 (BRI1-EMS-SUPPRESSOR 1)	C.G.	S.X.	Please select
0.05	4e-3	42	GmaAffx.37372.1.S1_at	BM886777	-	-	2e-1	At1g26300	BSD domain-containing protein	C.G.	S.X.	Please select
0.01	2e-2	40	PsAffx.C12000070_at	PsAffx.C12000070	-	-	6e+0	At5g02030	RPL (REPLUMLESS)	C.G.	S.X.	Please select
0.03	3e-1	36	GmaAffx.76750.1.S1_at	BF071393	-	-	1e-3	At5g62270	-	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C20000132_at	PsAffx.C20000132	-	-	6e-1	At1g13810	DNA binding / nuclease	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.39699.2.S1_at	CA852256	-	-	2e-7	At3g02880	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.2698.1.S1_at	CD397988	-	-	2e+0	At3g22770	F-box family protein-related	C.G.	S.X.	Please select
0.01	4e+0	32	PsAffx.C945000002_s_at	PsAffx.C945000002	-	-	1e+0	At5g45105	ZIP8 (ZINC TRANSPORTER 8 PRECURSOR)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	8e-4	44	Arabidopsis thaliana	At5g61660	836288	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	32	Hordeum vulgare	HVSMEg0004N03r2_at	HVSMEg0004N03r2	-	-	2e+0	At3g50360	ATCEN2 (CENTRIN2)	C.G.	S.X.	Please select
0.07	4e-1	36	Oryza sativa	Os02g0210400	9630.m01076	-	-	2e-2	At5g61660	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	3e-1	36	Populus trichocarpa	PtpAffx.6615.1.A1_s_at	CV234003	hypothetical protein	-	3e-1	At4g18280	glycine-rich cell wall protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	5e-2	38	Triticum aestivum	TaAffx.30741.1.S1_at	CA622512	-	-	1e+0	At5g37550	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1618690_at	CF207597	hypothetical protein LOC100259195	-	3e-16	At1g20110	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	Zm.10193.1.S1_at	BE519382	-	-	4e+0	At4g36460	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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