CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.17436.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.17436.1.S1_at CD397773 - - 4e-23 At4g36450 ATMPK14 (Mitogen-activated protein kinase 14) S.X. H.G.
0.60 80.7 Gma.6542.1.S1_at BE821609 - - 3e-20 At2g01690 binding S.X. H.G.
0.57 78.8 GmaAffx.92802.1.S1_s_at CF806550 - - 8e-33 At1g75440 UBC16 (ubiquitin-conjugating enzyme 16) S.X. H.G.
0.57 78.8 Gma.6207.1.S1_s_at CF922738 - - 7e-16 At4g19640 ARA7 S.X. H.G.
0.43 60.6 GmaAffx.89819.1.S1_s_at CK606604 - - 6e-61 At3g18820 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) S.X. H.G.
0.40 57.1 Gma.2314.1.S1_at AW310385 - - 1e-33 At4g24740 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 94.5 GSM292842 21_1443.1L.R271L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM293800 43_2177.2D.R141L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM294047 96_3095.2F.R9F1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3 93.3 GSM294010 62_3103.2F.V7F3U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2 92.8 GSM244909 3_VP9.I3L2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.2 92.8 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2 92.8 GSM292391 67_1229.1F.R141L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1 92.3 GSM294007 5_3095.2F.R9F1U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1 92.3 GSM293819 60_3069.2D.V7D3U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.0 91.7 GSM292510 26_1317.1H.R200L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 8e-22 105 GmaAffx.85010.1.S1_at AW705742 - - 1e-29 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.02 6e-1 36 HgAffx.24401.1.S1_at AF193871 - - 2e+0 At3g15390 SDE5 (silencing defective 5) C.G. S.X.
0.03 6e-1 36 Gma.4631.1.S1_at BE824210 - - 8e-8 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.01 3e+0 34 PsAffx.C1000263_at PsAffx.C1000263 - - 3e-1 At3g47640 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 3e+0 34 HgAffx.5595.1.S1_at CD747829 - - 1e+0 At5g55340 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein C.G. S.X.
0.02 3e+0 34 HgAffx.18444.1.S1_at CA940736 - - 3e-1 At5g06990 unknown protein C.G. S.X.
0.02 3e+0 34 GmaAffx.75292.1.S1_at BM521603 with no lysine kinase 9 - 5e-31 At5g28080 WNK9 C.G. S.X.
0.01 3e+0 34 Gma.7400.1.S1_at CD407646 asparagine synthetase, type III - 3e-56 At5g65010 ASN2 (ASPARAGINE SYNTHETASE 2) C.G. S.X.
0.01 3e+0 34 Gma.7400.1.S1_a_at CD407646 asparagine synthetase, type III - 3e-56 At5g65010 ASN2 (ASPARAGINE SYNTHETASE 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 4e-23 109 Arabidopsis thaliana At4g36450 829797 ATMPK14 (Mitogen-activated protein kinase 14) member of MAP Kinase - - - C.G. S.X.
0.20 2e-7 56 Hordeum vulgare Contig5228_s_at Contig5228 - - 2e-17 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.13 2e-11 71 Oryza sativa Os02g0148100 AF216317.1 - MAP kinase MAPK2 (MAP kinase 3) 7e-63 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.29 2e-47 190 Populus trichocarpa PtpAffx.36788.1.S1_at CV279209 hypothetical protein - 1e-52 At2g18170 ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) C.G. S.X.
0.15 1e-7 57 Triticum aestivum Ta.7205.1.S1_at BJ274532 - - 7e-17 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
0.06 4e-5 48 Vitis vinifera 1609700_at CF517700 - - 1e-9 At1g59580 ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) C.G. S.X.
0.09 8e-1 34 Zea mays Zm.6141.1.S1_at CA399949 MAPK - 4e-15 At1g10210 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage