Gene omics information

Query gene ID	Gma.17408.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	92.5	Gma.17408.1.S1_at	BE057084	-	-	8e-3	At3g10420	sporulation protein-related	S.X.	H.G.	Please select
0.50	71.7	Gma.12481.1.S1_s_at	CD416459	-	-	3e-12	At5g46800	BOU (A BOUT DE SOUFFLE)	S.X.	H.G.	Please select
0.44	63.3	Gma.12481.2.S1_at	CA851201	-	-	6e-3	At5g46800	BOU (A BOUT DE SOUFFLE)	S.X.	H.G.	Please select
0.43	60.6	Gma.12160.1.S1_at	BI317786	-	-	5e-11	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.40	57.1	Gma.12160.1.S1_a_at	BI317786	-	-	5e-11	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.12	15.1	GmaAffx.93297.1.S1_s_at	CF809022	-	-	4e-19	At1g10500	ATCPISCA (chloroplast-localized IscA-like protein)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
52.9	99.9	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
44.8	99.9	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
36.1	99.9	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
35.4	99.9	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
31.6	99.9	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
29.2	99.8	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
28.6	99.8	GSM209573	mock_0hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
27.8	99.8	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
24.7	99.8	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
22.8	99.8	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	7e-1	36	PsAffx.C43000078_at	PsAffx.C43000078	-	-	9e-1	At1g12790	-	C.G.	S.X.	Please select
0.02	7e-1	36	GmaAffx.59815.1.S1_at	BU549808	MYB transcription factor MYB109	-	5e-14	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.02	7e-1	36	GmaAffx.22480.1.S1_at	BU550128	-	-	1e-26	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.02	7e-1	36	Gma.8370.1.S1_at	BQ454087	-	-	4e-4	At2g20630	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C80000077_at	PsAffx.C80000077	-	-	1e+0	At4g22285	ubiquitin thiolesterase/ zinc ion binding	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C51000008_at	PsAffx.C51000008	-	-	3e+0	At1g31170	SRX (SULFIREDOXIN)	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C24000069_at	PsAffx.C24000069	-	-	1e+0	At3g11580	DNA-binding protein, putative	C.G.	S.X.	Please select
0.03	3e+0	34	GmaAffx.19934.1.S1_at	BU764072	-	-	3e+0	At4g16030	structural constituent of ribosome	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.15385.1.S1_at	BU548956	-	-	3e-15	At5g56590	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-3	42	Arabidopsis thaliana	At3g10420	820206	sporulation protein-related	F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;BOPAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-2	40	Hordeum vulgare	Contig21266_at	Contig21266	-	-	5e+0	At5g15210	ATHB30 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 30)	C.G.	S.X.	Please select
0.09	4e-6	54	Oryza sativa	Os07g0187400	9635.m00855	-	AAA ATPase domain containing protein	4e-34	At3g10420	sporulation protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	3e-28	127	Populus trichocarpa	Ptp.6110.1.S1_at	CV266769	hypothetical protein	-	3e-14	At3g10420	sporulation protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e+0	34	Triticum aestivum	TaAffx.7184.1.S1_at	CA666025	-	-	1e+1	At5g38050	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1612150_at	CF516572	-	-	2e-1	At5g55360	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zea mays	Zm.4502.1.A1_at	AI734482	-	-	5e+0	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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