CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.1739.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.89 93.5 Gma.1739.1.S1_at BG237697 - - 2e-13 At1g01820 PEX11C (PEROXIN 11C) S.X. H.G.
0.33 46.1 Gma.5246.2.S1_a_at BQ296792 - - 2e-4 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) S.X. H.G.
0.25 32.6 Gma.1739.2.S1_s_at BG043689 - - 2e-21 At3g61070 PEX11E S.X. H.G.
0.14 17.5 Gma.4991.1.S1_at CD401320 - - 3e-30 At1g01230 ORMDL family protein S.X. H.G.
0.14 17.5 Gma.6221.1.S1_at AW350898 - - 2e-22 At1g32130 - S.X. H.G.
0.09 12.0 Gma.13106.1.S1_at CD393221 beclin 1 protein - 1e-60 At3g61710 autophagy protein Apg6 family S.X. H.G.
0.08 11.0 GmaAffx.40935.1.S1_at AI959894 - - 2e+0 At5g67490 unknown protein S.X. H.G.
0.08 11.0 GmaAffx.91519.1.S1_s_at CF807244 - - 4e-17 At1g29850 double-stranded DNA-binding family protein S.X. H.G.
0.05 8.0 Gma.12500.1.S1_at AW570469 - - 3e-27 At1g48790 mov34 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.5 99.5 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
12.3 99.5 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
8.6 99.1 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.8 97.0 GSM293616 45_3030.2B.R9B2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM209576 resistant_12hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6 96.7 GSM294114 6_3114.2G.SLG1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM209594 resistant_12hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2 96.0 GSM293560 73_2004.2A.R270P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM292589 19_C160.1I.V7I3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293357 44_C081.1Q.SLQ2U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 2e-131 470 Gma.1739.2.S1_s_at BG043689 - - 2e-21 At3g61070 PEX11E C.G. S.X.
0.02 3e+0 34 Gma.5008.1.S1_at BI970404 - - 1e-6 At1g01770 unknown protein C.G. S.X.
0.02 3e+0 34 Gma.16658.1.S1_at CD406779 - - 9e-9 At5g53050 hydrolase, alpha/beta fold family protein C.G. S.X.
0.01 3e+0 34 Gma.11947.1.S1_at BE473573 - - 1e-5 At3g13960 AtGRF5 (GROWTH-REGULATING FACTOR 5) C.G. S.X.
0.02 3e+0 34 Gma.10918.1.S1_at BI941629 - - 8e-12 At1g09130 ATP-dependent Clp protease proteolytic subunit, putative C.G. S.X.
0.01 1e+1 32 PsAffx.C75000041_at PsAffx.C75000041 - - 1e-1 At3g28520 AAA-type ATPase family protein C.G. S.X.
0.01 1e+1 32 PsAffx.C38000008_at PsAffx.C38000008 - - 3e+0 At3g51020 unknown protein C.G. S.X.
0.01 1e+1 32 PsAffx.C3000126_at PsAffx.C3000126 - - 6e+0 At5g64800 CLE21 (CLAVATA3/ESR-RELATED 21) C.G. S.X.
0.01 1e+1 32 PsAffx.C208000011_at PsAffx.C208000011 - - 6e-3 At5g04890 RTM2 (RESTRICTED TEV MOVEMENT 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 2e-13 77 Arabidopsis thaliana At1g01820 839257 PEX11C (PEROXIN 11C) member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. - - - C.G. S.X.
0.13 5e-9 61 Hordeum vulgare Contig7593_at Contig7593 - - 6e-7 At3g61070 PEX11E C.G. S.X.
0.19 8e-11 69 Oryza sativa Os06g0127000 AK100186.1 - Peroxisomal biogenesis factor 11 family protein 7e-16 At2g45740 PEX11D C.G. S.X.
0.35 8e-38 159 Populus trichocarpa PtpAffx.17383.2.A1_s_at CV283276 hypothetical protein - 8e-12 At2g45740 PEX11D C.G. S.X.
0.15 6e-4 46 Triticum aestivum Ta.2871.1.S1_at CK193836 - - 5e-11 At2g45740 PEX11D C.G. S.X.
0.38 8e-53 206 Vitis vinifera 1615857_s_at BQ797394 hypothetical protein LOC100267827 - 2e-53 At1g01820 PEX11C (PEROXIN 11C) C.G. S.X.
0.02 2e+1 30 Zea mays ZmAffx.755.1.S1_at AI745946 - - 1e-27 Atcg00800 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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