Gene omics information

Query gene ID	Gma.17344.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.36	50.8	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	S.X.	H.G.	Please select
0.83	92.5	Gma.732.1.A1_at	AW309355	-	-	4e-7	At4g07390	PQ-loop repeat family protein / transmembrane family protein	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	S.X.	H.G.	Please select
0.63	82.9	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	S.X.	H.G.	Please select
0.61	81.8	Gma.8460.1.S1_at	AF404404.1	acyl-CoA oxidase	-	7e-39	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	S.X.	H.G.	Please select
0.48	67.7	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	S.X.	H.G.	Please select
0.44	63.3	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.7	94.8	GSM171630	18_Z.I.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
2.6	94.5	GSM293545	5_3015.2A.V7A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM293496	15_3013.2A.SLA3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM293300	82_C059.1P.SLP1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM244779	10_SLO.M1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.5	94.2	GSM244866	30_SLO.M1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.5	94.2	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293532	48_2019.2A.R192U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293259	45_1179.1P.R110U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293326	16_1591.1Q.R301U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	710	Gma.17344.2.S1_s_at	BU080862	-	-	4e-13	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.02	1e+0	36	PsAffx.CL111Contig1_at	PsAffx.CL111Contig1	-	-	9e+0	At3g02000	ROXY1	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.90981.1.S1_s_at	CF806706	-	-	1e-6	At1g02330	-	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.90981.1.S1_at	CF806706	-	-	1e-6	At1g02330	-	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.76950.1.S1_at	BE556441	-	-	5e-29	At3g01060	unknown protein	C.G.	S.X.	Please select
0.00	4e+0	34	PsAffx.C71000071_at	PsAffx.C71000071	-	-	5e-2	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C35000028_at	PsAffx.C35000028	-	-	7e+0	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C232000008_at	PsAffx.C232000008	-	-	9e-1	At2g33385	arpc2b (actin-related protein C2B)	C.G.	S.X.	Please select
0.02	4e+0	34	PsAffx.C228000010_at	PsAffx.C228000010	-	-	6e-3	At1g30135	JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	7e-41	169	Arabidopsis thaliana	At2g33040	817866	ATP synthase gamma chain, mitochondrial (ATPC)	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	7e-27	121	Hordeum vulgare	Contig2722_at	Contig2722	-	-	2e-32	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.26	2e-43	178	Oryza sativa	Os.10703.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	6e-76	286	Populus trichocarpa	PtpAffx.249.66.A1_s_at	CV227553	hypothetical protein	-	2e-52	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	6e-29	129	Triticum aestivum	Ta.14480.2.S1_at	BU099921	-	-	3e-28	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.49	2e-51	202	Vitis vinifera	1611755_at	CB918301	hypothetical protein LOC100246670	-	4e-27	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.22	2e-39	163	Zea mays	Zm.5289.2.A1_a_at	AI600945	hypothetical protein LOC100274172	-	1e-30	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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