CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.17071.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.9 Gma.17071.1.S1_at BE822434 - - 6e-2 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) S.X. H.G.
0.57 78.8 GmaAffx.16870.1.S1_at BI970931 - - 6e-22 At2g01650 PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2) S.X. H.G.
0.50 71.7 Gma.2660.1.S1_at BE657176 - - 9e-13 At1g69060 heat shock protein binding S.X. H.G.
0.48 67.7 Gma.3083.1.S1_at BE474466 - - 3e-65 At4g33430 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) S.X. H.G.
0.46 65.5 Gma.6902.1.S1_a_at CD396278 - - 1e-12 At5g01010 - S.X. H.G.
0.22 28.1 Gma.2608.1.S1_at BE058812 - - 1e-9 At4g11740 SAY1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 97.1 GSM191088 Soybean_Cotyledon_II2 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
3.3 96.2 GSM292274 19_C089.1E.R9E3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM292292 39_C075.1E.R9E1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM292793 53_C197.1K.R9K3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9 95.4 GSM292386 60_1231.1F.R142U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM292791 51_1403.1K.R250L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8 95.1 GSM191087 Soybean_Cotyledon_II1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
2.6 94.5 GSM292542 55_C135.1H.R9H2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM293197 79_C053.1O.R9O3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM294383 42_2451.2J.R290L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-8 59 Gma.2618.1.S1_at CD411855 - - 7e-28 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) C.G. S.X.
0.01 1e+0 34 PsAffx.C79000068_at PsAffx.C79000068 - - 2e+0 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) C.G. S.X.
0.01 1e+0 34 PsAffx.C277000001_at PsAffx.C277000001 - - 6e+0 At1g22660 tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative C.G. S.X.
0.01 1e+0 34 PsAffx.C100000007_at PsAffx.C100000007 - - 1e-1 At4g39720 VQ motif-containing protein C.G. S.X.
0.01 5e+0 32 PsAffx.C69000061_at PsAffx.C69000061 - - 5e+0 At5g65320 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 5e+0 32 PsAffx.C54000089_at PsAffx.C54000089 - - 8e-1 At2g17340 pantothenate kinase-related C.G. S.X.
0.01 5e+0 32 PsAffx.C5000193_at PsAffx.C5000193 - - 8e-1 At4g24660 ATHB22 (HOMEOBOX PROTEIN 22) C.G. S.X.
0.02 5e+0 32 PsAffx.C12000087_at PsAffx.C12000087 - - 6e-1 At2g36325 hydrolase, acting on ester bonds C.G. S.X.
0.03 5e+0 32 PsAffx.C115000040_at PsAffx.C115000040 - - 4e+0 At4g30097 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-2 38 Arabidopsis thaliana At1g43890 840987 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) ras-related small GTPase - - - C.G. S.X.
0.09 4e-4 44 Hordeum vulgare Contig2377_s_at Contig2377 - - 1e-29 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) C.G. S.X.
0.10 2e-12 73 Oryza sativa Os.10537.1.S1_at - - - 0 C.G. S.X.
0.09 3e-7 56 Populus trichocarpa PtpAffx.27233.1.S1_at CV245846 hypothetical protein - 2e-61 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) C.G. S.X.
0.16 1e-6 54 Triticum aestivum Ta.1763.3.S1_at BE444966 - - 7e-25 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) C.G. S.X.
0.18 7e-11 65 Vitis vinifera 1611372_at CD711835 - - 9e-61 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) C.G. S.X.
0.10 4e-1 34 Zea mays Zm.7735.1.S1_at CF631408 - - 5e-26 At1g43890 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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