Gene omics information

Query gene ID	Gma.17053.5.S1_s_at
Gene name	glyceraldehyde-3-phosphate dehydrogenase /// glyceraldehyde-3-dehydrogenase C subunit
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.17053.5.S1_s_at	BM309062	glyceraldehyde-3-phosphate dehydrogenase /// glyceraldehyde-3-dehydrogenase C subunit	-	2e-48	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select
0.50	71.7	Gma.17344.2.S1_s_at	BU080862	-	-	4e-13	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.91720.1.S1_s_at	CF807445	-	-	6e-12	At2g21870	unknown protein	S.X.	H.G.	Please select
0.35	48.6	GmaAffx.92555.1.S1_s_at	CF808280	-	-	2e-113	At5g20020	RAN2	S.X.	H.G.	Please select
0.22	28.1	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	98.4	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM293589	20_2073.2B.R308L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM293539	54_3007.2A.SLA2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293595	26_2077.2B.R246U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293601	31_2069.2B.R213L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM244923	6_V71.M1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.2	96.0	GSM293246	33_1241.1P.R148U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM244930	8_CON.I3U2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.1	95.8	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	0	688	Gma.17053.2.S1_s_at	AW348911	glyceraldehyde-3-phosphate dehydrogenase /// glyceraldehyde-3-dehydrogenase C subunit	-	4e-166	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.76	0	680	GmaAffx.89821.1.A1_at	CK606602	glyceraldehyde-3-phosphate dehydrogenase /// glyceraldehyde-3-dehydrogenase C subunit	-	5e-64	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.76	0	680	GmaAffx.89821.1.S1_at	CK606602	Cultivar JS385 glyceraldehyde 3-phosphate dehydrogenase	-	5e-64	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.29	3e-32	139	Gma.5505.1.S1_at	BI942102	-	-	0	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.29	3e-32	139	Gma.5505.1.S1_a_at	BI942102	-	-	0	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C89000059_at	PsAffx.C89000059	-	-	2e-1	At4g21230	protein kinase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C40000056_at	PsAffx.C40000056	-	-	7e+0	At5g66250	kinectin-related	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.9790.1.A1_at	CK349913	-	-	1e+0	At2g24540	AFR (ATTENUATED FAR-RED RESPONSE)	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.9790.1.S1_at	CB378711	-	-	1e+0	At2g24540	AFR (ATTENUATED FAR-RED RESPONSE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	2e-48	192	Arabidopsis thaliana	At1g13440	837904	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis;C:in 8 components;BOPFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	6e-28	123	Hordeum vulgare	Contig149_at	Contig149	glyceraldehyde 3-phosphate dehydrogenase	-	3e-148	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.31	2e-12	73	Oryza sativa	Os02g0601300	AK099086.1	-	-	1e-166	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	4e-53	208	Populus trichocarpa	PtpAffx.85451.1.S1_s_at	CV131357	hypothetical protein	-	8e-129	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	3e-19	95	Triticum aestivum	TaAffx.113063.1.S1_at	CA618435	-	-	5e-47	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.60	3e-53	206	Vitis vinifera	1608087_s_at	CF568810	glyceraldehyde-3-phosphate dehydrogenase	-	2e-103	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select
0.29	1e-25	115	Zea mays	Zm.3765.1.S1_s_at	CD446889	GADPH (AA 1-337)	-	1e-113	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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