CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.16820.1.S1_s_at

Gene name glycinin A5A4B3 /// A5A4B3 subunits precursor (aa -23 to 539) /// glycinin

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.16820.1.S1_s_at X05652.1 glycinin A5A4B3 /// A5A4B3 subunits precursor (aa -23 to 539) /// glycinin - 5e-3 At5g19260 unknown protein S.X. H.G.
0.83 92.5 Gma.16043.1.S1_at BE657403 - - 2e+0 At2g38130 ATMAK3 S.X. H.G.
0.83 92.5 Gma.8432.1.S1_at U59425.1 precursor (AA -24 to 403) - 3e+0 At4g28990 RNA-binding protein-related S.X. H.G.
0.83 92.5 Gma.15534.1.S1_at U50081.1 lipoxygenase-3 - 4e-13 At1g55020 LOX1 S.X. H.G.
0.71 87.8 Gma.953.1.S1_at BE823997 - - 6e+0 At5g40700 unknown protein S.X. H.G.
0.67 86.1 GmaAffx.84879.1.S1_at AI735921 - - 6e-15 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
339.8 100.0 GSM309341 Wild type 1 GSE12300 Suppression of oleosin in soybean cotyledon
289.1 100.0 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
285.9 100.0 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
272.7 100.0 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
272.1 100.0 GSM309343 transgenic RNAiOleosin, biol rep 1, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
269.4 100.0 GSM309344 transgenic RNAiOleosin, biol rep 1, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
257.3 100.0 GSM309342 Wild type 2 GSE12300 Suppression of oleosin in soybean cotyledon
222.9 100.0 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
204.0 100.0 GSM309346 transgenic RNAiOleosin, biol rep 2, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
200.7 100.0 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 3e-162 571 Gma.16820.1.A1_at X05652.1 glycinin - 2e-5 At5g67520 adenylylsulfate kinase, putative C.G. S.X.
0.42 1e-158 559 Gma.1812.1.S1_at X02626.1 glycinin A5A4B3 /// A5A4B3 subunits precursor (aa -23 to 539) - 7e-2 At1g21910 AP2 domain-containing transcription factor family protein C.G. S.X.
0.33 1e-115 416 Gma.8205.1.S1_at AB000168.1 glycinin - 4e-3 At1g08340 rac GTPase activating protein, putative C.G. S.X.
0.06 5e-10 65 Gma.1898.1.S1_at M20733.1 Bowman-Birk proteinase isoinhibitor D-II /// protease inhibitor IV - 2e-2 At2g43430 GLX2-1 (GLYOXALASE 2-1) C.G. S.X.
0.03 4e-4 46 Gma.10058.1.S1_at AB030495.1 glycinin A1bB2-784 - 6e-2 At1g69810 WRKY36 C.G. S.X.
0.04 2e-3 44 PsAffx.psMA011xM09f_at PsAffx.psMA011xM09f - - 3e-4 At1g24310 unknown protein C.G. S.X.
0.04 2e-3 44 PsAffx.psMA011xM09f_s_at PsAffx.psMA011xM09f - - 3e-4 At1g24310 unknown protein C.G. S.X.
0.03 2e-3 44 PsAffx.C20000071_at PsAffx.C20000071 - - 4e-4 At1g24310 unknown protein C.G. S.X.
0.06 7e-3 42 PsAffx.C10000009_at PsAffx.C10000009 - - 2e+0 At5g27541 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-3 42 Arabidopsis thaliana At5g19260 832046 unknown protein F:unknown;P:unknown;C:unknown;MOFPBV - - - C.G. S.X.
0.04 9e-3 40 Hordeum vulgare Contig4670_s_at Contig4670 - - 4e+0 At4g32530 vacuolar ATP synthase, putative / V-ATPase, putative C.G. S.X.
0.03 2e-1 38 Oryza sativa OsAffx.30022.1.S1_at - - - 0 C.G. S.X.
0.04 4e-1 36 Populus trichocarpa PtpAffx.221407.1.S1_at pmrna38282 hypothetical protein - 4e-1 At1g75190 unknown protein C.G. S.X.
0.05 3e-4 46 Triticum aestivum TaAffx.5086.1.S1_at CA723258 - - 5e-2 At3g50550 unknown protein C.G. S.X.
0.04 9e-5 46 Vitis vinifera 1616417_at CB975222 hypothetical protein LOC100257171 - 2e-2 At4g21610 LOL2 (LSD ONE LIKE 2) C.G. S.X.
0.07 5e-1 34 Zea mays ZmAffx.929.1.S1_at AI795460 - - 5e-2 At5g17900 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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