CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.16711.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 80.7 Gma.16711.2.S1_at AW201538 - - 1e-4 At5g48335 unknown protein S.X. H.G.
0.75 89.5 GmaAffx.22482.1.S1_at AW185059 - - 1e-28 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) S.X. H.G.
0.67 86.1 Gma.11925.1.S1_at CF922804 - - 3e-2 At1g11530 ATCXXS1 (C-terminal cysteine residue is changed to a serine 1) S.X. H.G.
0.61 81.8 Gma.6454.1.S1_at BM271508 - - 2e-90 At5g25265 unknown protein S.X. H.G.
0.61 81.8 Gma.12428.1.S1_a_at BI426385 - - 2e-28 At4g25680 unknown protein S.X. H.G.
0.53 74.2 Gma.15087.1.S1_at BI968833 - - 5e+0 At1g01530 AGL28 (AGAMOUS-LIKE 28) S.X. H.G.
0.52 73.1 Gma.10261.1.S1_at BG839311 - - 2e-52 At3g27090 - S.X. H.G.
0.50 71.7 GmaAffx.22482.1.S1_x_at AW185059 - - 1e-28 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.4 98.9 GSM292917 8_C216.1L.R9L3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1 98.5 GSM292192 53-1026.1A.R014P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9 98.0 GSM292922 94_1463.1L.R282U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM293459 47_1596.1R.R009P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM294206 58_2338.2H.R240P_new, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM293480 66_C092.1R.R9R1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM294571 41_3212.2L.R9L3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1 97.3 GSM294109 65_2324.2G.R214P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM292924 96_C206.1L.SLL2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 1e-171 603 Gma.16711.1.S1_at CD415330 - - 1e-1 At5g27541 C.G. S.X.
0.41 2e-112 406 Gma.16711.3.S1_a_at AI437814 - - 7e-2 At5g27541 C.G. S.X.
0.02 1e-2 42 PsAffx.C48000015_at PsAffx.C48000015 - - 7e-1 At4g23630 BTI1 (VIRB2-INTERACTING PROTEIN 1) C.G. S.X.
0.02 4e-2 40 Gma.14345.1.S1_a_at BU544949 - - 2e-53 At2g35020 UTP--glucose-1-phosphate uridylyltransferase family protein C.G. S.X.
0.02 4e-2 40 Gma.14345.1.S1_s_at BU544949 - - 2e-53 At2g35020 UTP--glucose-1-phosphate uridylyltransferase family protein C.G. S.X.
0.02 6e-1 36 PsAffx.C2000225_at PsAffx.C2000225 - - 1e+1 At4g11870 unknown protein C.G. S.X.
0.03 6e-1 36 GmaAffx.44460.1.S1_at BE440845 - - 1e-12 At2g41500 EMB2776 C.G. S.X.
0.02 2e+0 34 GmaAffx.72697.1.S1_at BI972058 - - 1e+0 At4g22810 DNA-binding protein-related C.G. S.X.
0.02 2e+0 34 GmaAffx.69057.1.S1_at BI973444 - - 1e-19 At2g21520 transporter C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-4 48 Arabidopsis thaliana At5g48335 2746200 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P - - - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare AF052395_at AF052395 - - 1e+0 At5g56600 PRF3 (PROFILIN 3) C.G. S.X.
0.03 8e-1 36 Oryza sativa Os06g0134400 AK108212.1 - Hypothetical protein 6e+0 At5g06980 unknown protein C.G. S.X.
0.11 2e-4 48 Populus trichocarpa Ptp.7216.3.S1_s_at CX176163 hypothetical protein - 3e-1 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.5871.3.S1_x_at CA696835 - - 2e-3 At4g13220 unknown protein C.G. S.X.
0.13 6e-10 63 Vitis vinifera 1609386_at BQ798112 hypothetical protein LOC100248340 - 4e-1 At5g14030 translocon-associated protein beta (TRAPB) family protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.152.1.A1_at AI667854 fasciclin-like arabinogalactan protein 8 - 5e+0 At5g07880 SNAP29 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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