CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.16657.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.16657.2.S1_at AW756079 - - 7e-18 At3g54190 - S.X. H.G.
0.27 35.7 GmaAffx.92146.1.S1_at CF807871 - - 2e-42 At2g29580 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein S.X. H.G.
0.23 29.9 GmaAffx.92886.1.S1_at CF808611 - - 3e-41 At5g09900 EMB2107 (EMBRYO DEFECTIVE 2107) S.X. H.G.
0.11 14.2 GmaAffx.18114.2.S1_at BU762948 - - 3e-10 At3g05090 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.04 7.0 GmaAffx.7255.1.S1_at BE657500 - - 3e-8 At4g37460 SRFR1 (SUPPRESSOR OF RPS4-RLD 1) S.X. H.G.
0.03 5.8 GmaAffx.58610.1.S1_at BF066199 - - 1e-2 At3g49430 SRp34a (Ser/Arg-rich protein 34a) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 98.5 GSM293247 34_C066.1P.R9P2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6 98.3 GSM292825 82_C184.1K.R9K1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6 98.3 GSM293613 42_2054.2B.R307P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5 98.3 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3 98.2 GSM292768 30_C198.1K.R9K3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3 98.2 GSM293789 33_3058.2D.R9D1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3 98.2 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2 98.1 GSM293240 28_1208.1P.R128P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1 98.1 GSM293865 18_2200.2E.R004P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM293229 18_C068.1P.R9P3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 2e-151 535 GmaAffx.91578.1.S1_s_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.36 2e-151 535 GmaAffx.91578.1.S1_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.36 2e-151 535 GmaAffx.91578.1.S1_x_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.19 5e-72 272 Gma.10781.1.S1_a_at AW101008 - - 7e-29 At2g38630 - C.G. S.X.
0.19 2e-25 117 GmaAffx.86503.1.S1_at BG157670 - - 3e+0 At5g13890 unknown protein C.G. S.X.
0.01 5e-4 46 PsAffx.C24000052_at PsAffx.C24000052 - - 2e-1 At3g56720 unknown protein C.G. S.X.
0.00 5e-1 36 PsAffx.C107000032_at PsAffx.C107000032 - - 2e-2 At1g33290 sporulation protein-related C.G. S.X.
0.02 5e-1 36 GmaAffx.84643.1.S1_at BU545213 - - 1e-19 At5g61580 PFK4 (PHOSPHOFRUCTOKINASE 4) C.G. S.X.
0.03 5e-1 36 GmaAffx.11491.1.S1_at AI966291 - - 1e+1 At4g20670 lipase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 7e-18 91 Arabidopsis thaliana At3g54190 824586 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PO - - - C.G. S.X.
0.08 7e-7 54 Hordeum vulgare Contig3161_at Contig3161 - - 3e-19 At3g54190 - C.G. S.X.
0.11 5e-8 59 Oryza sativa Os05g0482600 AK120343.1 - WD40-like domain containing protein 3e-28 At3g54190 - C.G. S.X.
0.22 1e-20 101 Populus trichocarpa PtpAffx.220882.1.S1_at pmrna37348 hypothetical protein - 6e-7 At2g38630 - C.G. S.X.
0.05 1e-4 48 Triticum aestivum TaAffx.91707.1.S1_at BJ305916 - - 4e-10 At2g38630 - C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1618983_at CD011003 - - 5e+0 At5g66170 - C.G. S.X.
0.03 2e+0 32 Zea mays Zm.17948.1.A1_at CF630514 - - 2e-2 At3g24570 peroxisomal membrane 22 kDa family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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