Gene omics information

Query gene ID	Gma.16051.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	Gma.16051.1.S1_at	CD398111	-	-	6e-25	At3g04780	-	S.X.	H.G.	Please select
0.77	90.3	GmaAffx.8929.1.S1_at	BG551351	-	-	1e-24	At3g49100	signal recognition particle 9 kDa protein, putative / SRP9, putative	S.X.	H.G.	Please select
0.65	83.8	Gma.5810.2.S1_a_at	AI965339	-	-	2e-79	At3g26340	20S proteasome beta subunit E, putative	S.X.	H.G.	Please select
0.64	83.4	GmaAffx.1729.2.S1_at	BG726769	-	-	2e-42	At4g35410	clathrin adaptor complex small chain family protein	S.X.	H.G.	Please select
0.63	82.9	Gma.17905.2.S1_at	CD393233	-	-	8e-37	At4g01320	ATSTE24	S.X.	H.G.	Please select
0.57	78.8	Gma.2892.1.S1_at	CD398484	-	-	3e-36	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	S.X.	H.G.	Please select
0.56	78.2	Gma.3820.3.S1_a_at	BI968156	-	-	3e-3	At1g30230	elongation factor 1-beta / EF-1-beta	S.X.	H.G.	Please select
0.56	78.2	GmaAffx.92081.1.S1_at	CF807806	-	-	1e-3	At1g47420	-	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.87924.1.S1_at	AW596893	-	-	9e-39	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	S.X.	H.G.	Please select
0.54	74.8	GmaAffx.56409.1.S1_at	BU965321	-	-	1e-16	At1g08750	GPI-anchor transamidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.6	94.5	GSM293341	2_1571.1Q.R159L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293337	26_C085.1Q.SLQ3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM293339	28_1553.1Q.R120L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293539	54_3007.2A.SLA2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM292176	31-1007.1A.R004L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1	92.3	GSM294683	53_2615.2M.R072U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1	92.3	GSM293346	34_1550.1Q.R078P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1	92.3	GSM293354	41_1563.1Q.R151L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1	92.3	GSM293611	40_3021.2B.R9B1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1	92.3	GSM293509	27_2029.2A.R045U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	2e-117	422	GmaAffx.90090.1.S1_s_at	CF805815	-	-	4e-1	At3g55730	MYB109 (myb domain protein 109)	C.G.	S.X.	Please select
0.03	1e-1	38	GmaAffx.51801.1.S1_at	BU761884	-	-	1e-3	At2g32580	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C767000001_s_at	PsAffx.C767000001	-	-	8e-1	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C767000001_at	PsAffx.C767000001	-	-	8e-1	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.02	6e-1	36	PsAffx.C34000094_at	PsAffx.C34000094	-	-	1e+1	At5g45730	DC1 domain-containing protein	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C104000039_s_at	PsAffx.C104000039	-	-	4e-1	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	C.G.	S.X.	Please select
0.00	2e+0	34	PsAffx.C164000049_at	PsAffx.C164000049	-	-	4e+0	At4g25130	peptide methionine sulfoxide reductase, putative	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.8628.1.S1_at	CB379873	-	-	3e-1	At5g03050	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.17625.2.A1_at	CK350216	-	-	4e+0	At5g67070	RALFL34 (ralf-like 34)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	6e-25	115	Arabidopsis thaliana	At3g04780	819638	-	Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	2e-4	46	Hordeum vulgare	Contig9259_at	Contig9259	-	-	2e-6	At3g04780	-	C.G.	S.X.	Please select
0.08	4e-9	63	Oryza sativa	Os03g0795500	AK101877.1	-	Protein of unknown function DUF1000 family protein	2e-4	At3g04780	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	9e-37	155	Populus trichocarpa	Ptp.5572.1.S1_s_at	CN549739	hypothetical protein	-	8e-24	At3g04780	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	3e-5	50	Triticum aestivum	Ta.8239.1.S1_a_at	CN013171	-	-	2e+0	At3g04780	-	C.G.	S.X.	Please select
0.26	7e-31	133	Vitis vinifera	1622119_s_at	CB915301	hypothetical protein LOC100258911	-	4e-19	At3g04780	-	C.G.	S.X.	Please select
0.13	2e-10	65	Zea mays	Zm.19160.1.S1_at	CO522402	thioredoxin-like protein 1	-	6e-7	At3g04780	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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