CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.158.1.S1_at

Gene name DNA polymerase delta

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 59.3 Gma.158.1.S1_at AF020193.1 DNA polymerase delta - 4e-168 At5g63960 EMB2780 (EMBRYO DEFECTIVE 2780) S.X. H.G.
0.57 78.8 GmaAffx.85846.1.S1_at BU547392 - - 2e-1 At5g46640 DNA-binding family protein S.X. H.G.
0.46 65.5 GmaAffx.87379.1.S1_at BI699241 - - 9e-51 At5g49160 MET1 (METHYLTRANSFERASE 1) S.X. H.G.
0.44 63.3 GmaAffx.63772.1.S1_at AW471580 - - 4e-9 At5g17690 TFL2 (TERMINAL FLOWER 2) S.X. H.G.
0.11 14.2 GmaAffx.64309.2.S1_at AW309050 - - 4e-43 At5g38110 ASF1B (ANTI- SILENCING FUNCTION 1B) S.X. H.G.
0.10 13.0 GmaAffx.30774.1.S1_at BE210070 - - 4e-50 At1g77720 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.6 99.8 GSM258499 Soybean shoot apical meristem, 4 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
25.0 99.8 GSM258501 Soybean shoot apical meristem, 1 short-day treatment replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
21.5 99.8 GSM258496 Vegetative soybean shoot apical meristem GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
20.8 99.7 GSM267287 Axillary meristem from 10-day-old soybean seedlings GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
20.4 99.7 GSM237068 Soy_shoot apical meristem GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
20.3 99.7 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
20.1 99.7 GSM258504 Soybean shoot apical meristem, 4 short-day replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
19.5 99.7 GSM258497 Soybean Shoot Apical Meristem, 1 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
18.6 99.7 GSM237069 Soy_shoot apical meristem2 GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
17.9 99.7 GSM267288 Axillary meristem from 10-day-old soybean seedlings repliacte 2 GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 40 PsAffx.C27000022_at PsAffx.C27000022 - - 3e-1 At1g58300 ho4 (HEME OXYGENASE 4) C.G. S.X.
0.01 2e-1 40 GmaAffx.11129.1.S1_at CD394680 - - 1e+0 At3g61430 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) C.G. S.X.
0.01 2e+0 36 PsAffx.C99000002_s_at PsAffx.C99000002 - - 1e+1 At3g13500 unknown protein C.G. S.X.
0.00 2e+0 36 PsAffx.C39000076_at PsAffx.C39000076 - - 3e+0 At2g03850 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
0.01 2e+0 36 PsAffx.C40000070_at PsAffx.C40000070 - - 1e+0 At2g44065 ribosomal protein L2 family protein C.G. S.X.
0.01 2e+0 36 PsAffx.C11000075_at PsAffx.C11000075 - - 2e-1 At3g46080 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 2e+0 36 HgAffx.19210.1.S1_at CA939971 - - 5e+0 At5g55380 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related C.G. S.X.
0.01 2e+0 36 GmaAffx.71343.1.S1_at BE555273 - - 1e-16 At5g38880 unknown protein C.G. S.X.
0.01 2e+0 36 GmaAffx.58370.1.A1_at BE660224 - - 2e-13 At2g45290 transketolase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 4e-168 593 Arabidopsis thaliana At5g63960 836517 EMB2780 (EMBRYO DEFECTIVE 2780) F:DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA replication;C:nucleus;OVBMFAP - - - C.G. S.X.
0.33 2e-121 436 Hordeum vulgare Contig14333_at Contig14333 - - 1e-58 At5g63960 EMB2780 (EMBRYO DEFECTIVE 2780) C.G. S.X.
0.51 3e-124 448 Oryza sativa Os11g0186400 AB037899.1 - DNA polymerase delta catalytic subunit (EC2.7.7.7) 5e-47 At5g63960 EMB2780 (EMBRYO DEFECTIVE 2780) C.G. S.X.
0.69 0 1538 Populus trichocarpa PtpAffx.205134.1.S1_at pmrna10163 hypothetical protein - 0 At5g63960 EMB2780 (EMBRYO DEFECTIVE 2780) C.G. S.X.
0.01 5e-1 38 Triticum aestivum TaAffx.81151.1.S1_at CA689118 - - 2e-1 At1g78370 ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1618103_at CF208972 - - 4e+0 At2g17070 unknown protein C.G. S.X.
0.04 1e-14 81 Zea mays Zm.4005.1.A1_at BE345363 - - 4e+0 At1g68140 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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