CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.15407.4.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 Gma.15407.4.S1_at AW185051 - - 1e-21 At5g52040 ATRSP41 S.X. H.G.
0.63 82.9 GmaAffx.61984.1.S1_at BM523130 - - 4e-9 At5g18810 SCL28 S.X. H.G.
0.55 76.3 GmaAffx.15284.1.S1_at BE822730 - - 6e+0 At1g21880 LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) S.X. H.G.
0.40 57.1 Gma.9020.2.S1_at AI736080 - - 1e-14 At2g43970 La domain-containing protein S.X. H.G.
0.31 42.2 GmaAffx.82.1.S1_at CD415578 - - 9e-8 At3g10210 - S.X. H.G.
0.15 18.7 Gma.4995.2.S1_at AW830184 - - 3e-4 At5g13020 emsy N terminus domain-containing protein / ENT domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.0 99.0 GSM294244 92_2340.2H.R202P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7 98.4 GSM293247 34_C066.1P.R9P2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7 98.4 GSM293390 74_1588.1Q.R230P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3 98.2 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.3 98.2 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
5.2 98.1 GSM294293 45_3162.2I.R9I3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1 98.1 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM292959 38_C232.1M.R9M3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM293911 5_2236.2E.R249P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 8e-2 38 PsAffx.C70000009_at PsAffx.C70000009 - - 4e-1 At5g04220 SYTC C.G. S.X.
0.02 3e-1 36 Gma.8498.1.S1_at AF329816.1 Cu/Zn-superoxide dismutase copper chaperone precursor - 1e-14 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) C.G. S.X.
0.03 3e-1 36 Gma.2174.1.S1_at BE822605 - - 6e-9 At4g27745 - C.G. S.X.
0.03 1e+0 34 HgAffx.8353.1.S1_at CB380148 - - 5e+0 At4g12382 - C.G. S.X.
0.04 1e+0 34 GmaAffx.40077.1.A1_at BE659246 - - 2e-1 At3g05740 RECQI1 (Arabidopsis RecQ helicase l1) C.G. S.X.
0.01 5e+0 32 PsAffx.C87000016_at PsAffx.C87000016 - - 3e-1 At5g03400 unknown protein C.G. S.X.
0.00 5e+0 32 PsAffx.C7000031_at PsAffx.C7000031 - - 1e+0 At5g37550 unknown protein C.G. S.X.
0.01 5e+0 32 PsAffx.C66000045_at PsAffx.C66000045 - - 6e+0 At3g61920 unknown protein C.G. S.X.
0.02 5e+0 32 PsAffx.C235000015_at PsAffx.C235000015 - - 8e-1 At2g32600 hydroxyproline-rich glycoprotein family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 1e-21 103 Arabidopsis thaliana At5g52040 835279 ATRSP41 encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. - - - C.G. S.X.
0.04 4e-1 34 Hordeum vulgare Contig9542_at Contig9542 - - 3e-6 At5g52040 ATRSP41 C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.15844.1.S1_at - - - 0 C.G. S.X.
0.44 5e-37 155 Populus trichocarpa PtpAffx.139439.1.S1_at CX179299 hypothetical protein - 1e-7 At4g25500 ATRSP35 C.G. S.X.
0.12 6e-2 38 Triticum aestivum Ta.4605.3.S1_a_at BJ246787 - - 7e-5 At3g61860 RSP31 C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1622259_at CD712226 - - 2e-1 At1g23240 caleosin-related family protein C.G. S.X.
0.04 1e-1 36 Zea mays ZmAffx.68.1.A1_at AI665143 - - 8e-1 At2g22290 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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