CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.15387.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 Gma.15387.2.S1_at AW101379 - - 2e-52 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) S.X. H.G.
0.50 71.7 Gma.9706.2.S1_s_at BI968374 - - 5e-15 At5g59160 TOPP2 S.X. H.G.
0.40 57.1 Gma.3109.1.A1_at CD408055 - - 3e+0 At2g46090 diacylglycerol kinase family protein S.X. H.G.
0.33 46.1 GmaAffx.76350.1.A1_at BE555004 - - 8e-1 At3g21371 unknown protein S.X. H.G.
0.33 46.1 Gma.8648.1.S1_s_at BU764853 - - 5e-1 At3g17160 unknown protein S.X. H.G.
0.27 35.7 Gma.10799.1.S1_at BG237181 - - 4e-96 At4g26100 CK1 (CASEIN KINASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 98.2 GSM292222 16_C029.1B.R9B2U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM292229 25_C029.1B.R9B2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM191078 Soybean_Cotyledon_SUS2 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
4.5 97.7 GSM147937 Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2 GSE6414 Expression data from soybean seed compartments with embryos at the globular stage
4.1 97.3 GSM182033 Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
4.0 97.2 GSM191077 Soybean_Cotyledon_SUS1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
3.8 97.0 GSM237069 Soy_shoot apical meristem2 GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.5 96.6 GSM237068 Soy_shoot apical meristem GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.2 96.0 GSM292386 60_1231.1F.R142U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM182044 Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.73 0 948 Gma.15387.1.S1_s_at CD399274 - - 8e-55 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) C.G. S.X.
0.41 1e-144 513 Gma.13248.1.S1_at BM523367 - - 2e-53 At3g08690 UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) C.G. S.X.
0.38 4e-79 295 Gma.17595.1.S1_s_at BI967850 ubiquitin-conjugation enzyme - 6e-56 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) C.G. S.X.
0.38 1e-63 244 Gma.11119.4.S1_x_at BE555322 - - 1e-94 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
0.38 1e-63 244 Gma.11119.4.S1_at BE555322 - - 1e-94 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
0.37 9e-62 238 Gma.11119.3.S1_at CF922781 - - 2e-83 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) C.G. S.X.
0.36 9e-59 228 Gma.11119.5.S1_at BI315933 - - 2e-99 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
0.36 9e-59 228 Gma.11119.5.S1_x_at BI315933 - - 2e-99 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
0.40 5e-54 212 GmaAffx.91367.1.S1_s_at CF806415 - - 5e-90 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 2e-52 206 Arabidopsis thaliana At5g41700 834173 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 - - - C.G. S.X.
0.39 7e-57 220 Hordeum vulgare Contig1431_at Contig1431 - - 2e-49 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
0.39 7e-57 222 Oryza sativa Os.11479.1.S1_at - - - 0 C.G. S.X.
0.46 3e-95 349 Populus trichocarpa Ptp.6476.3.S1_s_at CX170246 hypothetical protein - 1e-59 At1g64230 ubiquitin-conjugating enzyme, putative C.G. S.X.
0.39 1e-60 234 Triticum aestivum Ta.13700.1.S1_at CA486450 - - 5e-50 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
0.40 1e-66 252 Vitis vinifera 1612192_s_at CF518716 similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase - 8e-86 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) C.G. S.X.
0.40 4e-58 224 Zea mays Zm.4820.1.A1_a_at BG319643 hypothetical protein LOC100192684 - 1e-35 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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