Gene omics information

Query gene ID	Gma.15387.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	91.5	Gma.15387.1.S1_s_at	CD399274	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.67	86.1	Gma.10823.1.S1_at	BE821852	-	-	3e-32	At1g65220	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	S.X.	H.G.	Please select
0.60	80.7	Gma.4155.1.S1_at	CD394281	EREBP/AP2 transcription factor	-	2e-26	At1g53910	RAP2.12	S.X.	H.G.	Please select
0.57	78.8	Gma.16756.1.S1_x_at	BI967486	-	-	4e-66	At3g52560	UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.8927.1.S1_at	AW349333	-	-	5e-32	At4g39100	SHL1 (short life)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.8999.1.S1_at	CD403960	-	-	1e-32	At5g25760	PEX4 (PEROXIN4)	S.X.	H.G.	Please select
0.44	63.3	Gma.5720.1.S1_s_at	AW348669	-	-	4e-5	At1g51200	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.4	93.8	GSM293589	20_2073.2B.R308L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293491	10_3002.2A.SLA1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293307	89_1202.1P.R124P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2	92.8	GSM293256	42_1532.1P.R023P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1	92.3	GSM293264	4_C058.1P.R9P1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1	92.3	GSM293956	13_2286.2F.R031P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.1	92.3	GSM171651	22_W.K.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
2.1	92.3	GSM293586	18_2092.2B.R298P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.0	91.7	GSM294325	74_2388.2I.R284P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.0	91.7	GSM293254	40_1540.1P.R050P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	928	Gma.15387.2.S1_at	AW101379	-	-	2e-52	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.43	1e-137	490	Gma.13248.1.S1_at	BM523367	-	-	2e-53	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	C.G.	S.X.	Please select
0.40	4e-79	295	Gma.17595.1.S1_s_at	BI967850	ubiquitin-conjugation enzyme	-	6e-56	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.39	2e-62	240	Gma.11119.3.S1_at	CF922781	-	-	2e-83	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.38	8e-62	238	Gma.11119.4.S1_x_at	BE555322	-	-	1e-94	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.38	8e-62	238	Gma.11119.4.S1_at	BE555322	-	-	1e-94	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.38	8e-59	228	Gma.11119.5.S1_at	BI315933	-	-	2e-99	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.38	8e-59	228	Gma.11119.5.S1_x_at	BI315933	-	-	2e-99	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.41	5e-54	212	GmaAffx.91367.1.S1_s_at	CF806415	-	-	5e-90	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	8e-55	214	Arabidopsis thaliana	At5g41700	834173	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	2e-54	212	Hordeum vulgare	Contig1431_at	Contig1431	-	-	2e-49	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.38	4e-49	196	Oryza sativa	Os02g0261100	AB074412.1	-	Ubiquitin-conjugating enzyme OsUBC5b	2e-68	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	3e-95	349	Populus trichocarpa	Ptp.6476.3.S1_s_at	CX170246	hypothetical protein	-	1e-59	At1g64230	ubiquitin-conjugating enzyme, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	1e-53	210	Triticum aestivum	Ta.13700.1.S1_at	CA486450	-	-	5e-50	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.41	3e-79	293	Vitis vinifera	1612192_s_at	CF518716	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	8e-86	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.40	4e-55	214	Zea mays	Zm.356.1.S1_at	AF034946.1	hypothetical protein AY104017 /// ubiquitin conjugating enzyme	-	2e-18	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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