Gene omics information

Query gene ID	Gma.1520.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.9	Gma.1520.1.S1_at	BM527862	-	-	3e+0	At4g27810	unknown protein	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.20415.1.A1_at	CD411104	-	-	3e+0	At5g18250	unknown protein	S.X.	H.G.	Please select
0.57	78.8	Gma.15705.1.S1_at	BI971354	-	-	2e-19	At1g18450	ATARP4	S.X.	H.G.	Please select
0.55	76.3	Gma.15509.2.A1_at	CD398971	-	-	7e-1	At4g09012	-	S.X.	H.G.	Please select
0.48	67.7	Gma.12359.1.S1_at	AW309567	-	-	4e+0	At5g66370	unknown protein	S.X.	H.G.	Please select
0.43	60.6	Gma.6467.2.A1_at	CD412680	MSI1	-	2e-11	At5g58230	MSI1 (MULTICOPY SUPRESSOR OF IRA1)	S.X.	H.G.	Please select
0.39	54.5	Gma.7748.1.S1_at	BI969403	-	-	9e-6	At3g60360	EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.38078.1.S1_at	CD405216	-	-	4e-4	At5g39850	40S ribosomal protein S9 (RPS9C)	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.47099.1.A1_at	BU546980	-	-	3e-1	At2g19820	LBD9 (LOB DOMAIN-CONTAINING PROTEIN 9)	S.X.	H.G.	Please select
0.24	30.9	GmaAffx.23435.1.S1_at	AW349191	-	-	3e+0	At4g24930	thylakoid lumenal 17.9 kDa protein, chloroplast	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
107.4	100.0	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
86.1	100.0	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
77.7	100.0	GSM182040	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
73.8	100.0	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
59.1	99.9	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
57.6	99.9	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
53.4	99.9	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
51.8	99.9	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
50.9	99.9	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
49.1	99.9	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	9e-14	77	Gma.13941.1.A1_at	CD411089	-	-	7e-1	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select
0.05	5e-3	42	GmaAffx.29906.1.S1_at	BI973640	-	-	1e-15	At1g07970	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Gma.5031.1.S1_at	BI970511	-	-	1e-29	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.30057.1.S1_at	BU549682	-	-	1e-1	At3g21740	APO4 (ACCUMULATION OF PHOTOSYSTEM ONE 4)	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.10933.5.S1_at	AW310411	-	-	7e-122	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C83000035_at	PsAffx.C83000035	-	-	7e+0	At4g11140	CRF1 (CYTOKININ RESPONSE FACTOR 1)	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C300000003_at	PsAffx.C300000003	-	-	6e+0	At5g50090	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	GmaAffx.59972.1.S1_at	BU550745	-	-	1e-1	At5g36970	NHL25 (NDR1/HIN1-LIKE 25)	C.G.	S.X.	Please select
0.02	5e+0	32	GmaAffx.55195.1.S1_at	BQ296839	WRKY44 protein	-	7e-6	At2g37260	TTG2 (TRANSPARENT TESTA GLABRA 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At4g27810	828894	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	Contig9437_at	Contig9437	-	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	C.G.	S.X.	Please select
0.04	7e+0	32	Oryza sativa	Os01g0791600	9633.m03286	-	Ribulose bisphosphate carboxylase large chainprecursor (EC 4.1.1.39) (RuBisCO large subunit)	4e-129	Atcg00490	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e-2	38	Populus trichocarpa	PtpAffx.201652.1.S1_at	pmrna3278	hypothetical protein	-	6e-1	At5g14000	anac084 (Arabidopsis NAC domain containing protein 84)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	9e-1	34	Triticum aestivum	Ta.18072.1.S1_at	CA628068	-	-	2e+0	At1g79260	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1617289_at	BQ792924	-	-	3e+0	At3g14981	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.1092.1.S1_s_at	AW066155	-	-	1e-107	Atcg00490	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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