Gene omics information

Query gene ID Gma.1517.2.S1_a_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8091.5Gma.1517.2.S1_a_atBE059859--8e-18At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)S.X.H.G.
0.5071.7GmaAffx.58405.1.S1_atBE802822--2e-5At2g40730HEAT repeat-containing proteinS.X.H.G.
0.4766.6Gma.4322.2.S1_atBM954531--2e-4At2g41900zinc finger (CCCH-type) family proteinS.X.H.G.
0.3650.8Gma.8062.1.A1_a_atBI971176--1e-7At2g21630transport protein, putativeS.X.H.G.
0.3346.1Gma.13073.1.S1_atBQ297562--1e-42At3g54170ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)S.X.H.G.
0.3346.1Gma.16690.1.S1_atBQ611311--9e-40At3g57890tubulin-specific chaperone C-relatedS.X.H.G.
0.2939.0Gma.3754.1.S1_x_atBI426229--9e-2At3g18430calcium-binding EF hand family proteinS.X.H.G.
0.2329.9GmaAffx.39202.1.S1_atAW395777--1e-15At3g09300ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B)S.X.H.G.
0.2228.1GmaAffx.28102.1.S1_atBQ453371--1e-50At1g20575dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeS.X.H.G.
0.2025.1Gma.2121.1.S1_x_atBE659047--1e-11At4g11410short-chain dehydrogenase/reductase (SDR) family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.496.4GSM2945288_2508.2K.R082P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.095.6GSM182044Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stage
2.895.1GSM29459664_2566.2L.R157P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.794.8GSM201124Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
2.694.5GSM29467445_2578.2M.R286P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.594.2GSM29420153_2352.2H.R194P_new, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.594.2GSM29264169_1324.1I.R203P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.594.2GSM29458150_2559.2L.R195L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.594.2GSM29465023_3220.2M.SLM1P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.493.8GSM2928116_1406.1K.R251P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0001354Gma.1517.2.S1_x_atBE059859--8e-18At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
1.0001354Gma.1517.2.S1_s_atBE059859--8e-18At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.275e-140498Gma.1517.1.S1_atBI972424--1e-32At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.275e-140498Gma.1517.1.S1_x_atBI972424--1e-32At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.339e-77287GmaAffx.92806.1.S1_atCF808531--6e-37At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.243e-76286GmaAffx.81294.2.S1_atBU578009--5e-2At4g11590F-box family proteinC.G.S.X.
0.191e-66254GmaAffx.55216.1.S1_atBM085857--3e-5At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.321e-51204GmaAffx.81294.1.S1_atAI735831--2e-1At5g50100-C.G.S.X.
0.052e-1377Gma.7546.1.S1_atBU083528Hypothetical protein, partial cds, colne:ssc7-1e-1At1g71880SUC1 (Sucrose-proton symporter 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.158e-1891Arabidopsis thalianaAt4g23650828465CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family.---C.G.S.X.
0.031e-240Hordeum vulgareContig4593_atContig4593--9e-10At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.065e-859Oryza sativaOs12g01698009640.m00650-Calcium-dependent protein kinase SK5 (EC 2.7.1.-)(CDPK)2e-8At4g09570CPK4C.G.S.X.
0.104e-2099Populus trichocarpaPtpAffx.13635.1.A1_atCK097331calcium dependent protein kinase 3-7e-3At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.043e-240Triticum aestivumTa.3942.1.S1_a_atBJ255487--3e-9At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
0.042e+032Vitis vinifera1618907_x_atCF202612.1--4e+0At5g17470calmodulin-related protein, putativeC.G.S.X.
0.153e-652Zea maysZm.17082.1.S1_s_atAY108221.1--4e-12At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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