CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.13588.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 Gma.13588.1.S1_at CD401190 - - 9e-1 At5g53040 RWP-RK domain-containing protein S.X. H.G.
0.67 86.1 GmaAffx.65255.1.A1_at BU545616 - - 1e-7 At1g76990 ACR3 S.X. H.G.
0.60 80.7 Gma.7114.1.A1_at BG156723 - - 3e-4 At1g76990 ACR3 S.X. H.G.
0.03 5.8 GmaAffx.90596.1.S1_s_at CF806321 - - 5e-3 At4g33985 unknown protein S.X. H.G.
0.03 5.8 Gma.5210.1.S1_at AW349120 - - 1e-12 At5g41410 BEL1 (BELL 1) S.X. H.G.
0.02 4.5 GmaAffx.71293.1.S1_s_at AW569180 - - 3e+0 At1g35255 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.6 99.7 GSM209592 resistant_6hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
20.4 99.7 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.3 99.5 GSM209573 mock_0hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
10.9 99.4 GSM209596 resistant_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.6 99.2 GSM209582 mock_0hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.5 99.2 GSM209593 susceptible_6hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.9 99.2 GSM209575 susceptible_6hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.8 99.1 GSM293855 93_2192.2D.R107P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.2 98.9 GSM292800 5_1436.1K.R267P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9 98.8 GSM292603 32_1362.1I.R226P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 HgAffx.3464.1.A1_at CK351093 - - 3e+0 At4g00420 double-stranded RNA-binding domain (DsRBD)-containing protein C.G. S.X.
0.04 3e-1 36 HgAffx.3464.1.S1_at CK351093 - - 3e+0 At4g00420 double-stranded RNA-binding domain (DsRBD)-containing protein C.G. S.X.
0.02 3e-1 36 GmaAffx.78800.1.S1_at BG045448 - - 6e-1 At1g24620 polcalcin, putative / calcium-binding pollen allergen, putative C.G. S.X.
0.03 3e-1 36 GmaAffx.73623.1.S1_at BM188864 - - 2e+0 At5g14410 unknown protein C.G. S.X.
0.02 3e-1 36 Gma.400.2.S1_at BF219574 - - 5e-45 At3g09350 armadillo/beta-catenin repeat family protein C.G. S.X.
0.02 3e-1 36 Gma.400.2.S1_a_at BF219574 - - 5e-45 At3g09350 armadillo/beta-catenin repeat family protein C.G. S.X.
0.02 1e+0 34 PsAffx.CL146Contig1_at PsAffx.CL146Contig1 - - 8e-1 At3g61410 - C.G. S.X.
0.04 1e+0 34 HgAffx.1757.1.S1_at CK350933 - - 1e+1 At5g04440 unknown protein C.G. S.X.
0.05 1e+0 34 GmaAffx.84088.1.A1_at CD403174 - - 3e+0 At4g01026 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-1 34 Arabidopsis thaliana At5g53040 835383 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:endomembrane system;PO - - - C.G. S.X.
0.04 7e+0 30 Hordeum vulgare rbah53j14_at rbah53j14 - - 4e-2 At3g26650 GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) C.G. S.X.
0.04 7e+0 32 Oryza sativa Os06g0317700 9634.m02085 - - 5e-1 At2g44290 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.45814.1.A1_at CK093944 - - 3e+0 At4g14340 CKI1 (CASEIN KINASE I) C.G. S.X.
0.05 1e+0 34 Triticum aestivum Ta.13752.1.S1_at AL819415 - - 3e+0 At4g18360 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1618876_at CA816946 - - 4e+0 At2g21130 peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase C.G. S.X.
0.04 4e-1 34 Zea mays Zm.8114.1.A1_at BM072985 - - 1e+0 At4g21220 bacterial transferase hexapeptide repeat-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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